Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq327 370 2e-100 seq20 343 2e-92 seq2418 336 3e-90 seq25 280 2e-73 seq4 279 8e-73 seq1387 277 3e-72 seq267 242 6e-62 seq1587 223 5e-56 seq273 203 5e-50 seq62 172 8e-41 seq806 127 3e-27 seq230 87.8 3e-15 >seq327 Length=402351 Score = 370 bits (410), Expect = 2e-100 Identities = 239/257 (93%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 125053 GTACAAAGGGTAGGGACGTAGTCAACGTGAGCT-GATGACTCGCGCTTACTAGGAATT-C 124996 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 124995 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCAAAGATT 124936 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||| ||||| ||||||||||||| ||||||||||| || |||||||| Sbjct 124935 ACCCGGGCCTGTCGGYCAAGGCTATAGACTCGTTGACTACATCAGTGTCGCACGCGTGCG 124876 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 124875 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAATTTACGTGGCCTAAAC 124816 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 124815 GGCCATAGTCCCTCTAA 124799 Score = 343 bits (380), Expect = 2e-92 Identities = 233/257 (91%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||| ||||| ||||||| ||||||| ||||||| |||||||||||||||| | Sbjct 98527 GTACAAAGGGCTGGGACATAGTCAATGCGAGCT-GATGACTTGCGCTTACTAGGAATT-C 98470 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 98469 CTCTTTGAAGACCAACAATTGCAATGATCTATCCCCATCATGATGAAATTTTCAAAGATT 98410 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 98409 ACCCGGGCCTRTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAACGCGCGTGCA 98350 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||| |||||| ||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 98349 GCCCAAAACATCAAAGGGCACCATAGACCCGTTATTGCCTCAAACTTCCGTGGCCTAAAT 98290 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 98289 GGCCATAGTCCCTCTAA 98273 Score = 181 bits (200), Expect = 2e-43 Identities = 117/124 (94%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| ||||||||| |||||||||| ||| |||||||| ||||||||||||||||| | Sbjct 305611 GTACAATGGGCAGGGATGTAGTCAACGTGAG-TTGATGACCCGCGCTTACTAGGAATT-C 305554 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 305553 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCAAAGATT 305494 Query 120 ACCC 123 |||| Sbjct 305493 ACCC 305490 Score = 174 bits (192), Expect = 2e-41 Identities = 118/129 (91%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||| ||||||||||||||||| || |||||||| |||||||||||||| | Sbjct 193599 GTACAAAGGCCAGAGACGTAGTCAACGCGAGATT-ATGACTCGTGCTTACTAGGAATT-C 193542 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| Sbjct 193541 CTCGTTGAAGACCAACAATTGMAATGATCTATCCCCATCACGATGAAATTTCCAATGATT 193482 Query 120 ACCCGGACC 128 || ||| || Sbjct 193481 ACACGGCCC 193473 Score = 174 bits (192), Expect = 2e-41 Identities = 105/109 (96%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| ||| Sbjct 279419 ACAAAGGACAGGGACGTAGTCAACGCGAGCT-GATGACTCRCGCTTACTAGGAATT-CCT 279362 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 111 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 279361 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 279313 Score = 165 bits (182), Expect = 1e-38 Identities = 112/122 (92%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| || |||||||||||||| |||| ||||||| |||||||||||||||| | Sbjct 315333 GTACAAAGGGTAGAGACGTAGTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATTAC 315275 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119 |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| Sbjct 315274 -TCGTTGAAGACCAACAATTGCAATGATCTACCCCCATCACGATGAAATTTTCAATGATT 315216 Query 120 AC 121 || Sbjct 315215 AC 315214 Score = 104 bits (114), Expect = 4e-20 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 193478 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCCCAAACTTCCATGGCCTAG 193419 Query 238 AAGGCCAT-CTCCCTCGAA 255 | | |||| |||||| || Sbjct 193418 ACGACCATAGTCCCTCTAA 193400 Score = 87.8 bits (96), Expect = 3e-15 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||| |||||| |||||||| | ||||||||| ||||| | Sbjct 315211 GGCCCAGAACATCTAAGGGCATCAAAGACCTATTATTGCCCCGAACTTCCGTTGCCTAGA 315152 Query 239 AGGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 315151 CGACCATAGTCCCTCTAA 315134 >seq20 Length=7206814 Score = 343 bits (380), Expect = 2e-92 Identities = 235/257 (91%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||| |||||||| ||||| |||||||||| | ||||||||||||| | Sbjct 1670693 GTACAAAGGGTAGGGATGTAGTCAATGCGAG-TTGATGACTCACACTTACTAGGAATT-C 1670750 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 || |||||| |||||||||||||||||| |||||| |||| |||||||||| |||| ||| Sbjct 1670751 CTTGTTGAA-ACCAACAATTGCAATGATTTATCCC-ATCATGATGAAATTTTCAAATATT 1670808 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1670809 ACCCGGGCCTGTTGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 1670868 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1670869 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAT 1670928 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 1670929 GGCCATAGTCCCTCTAA 1670945 >seq2418 Length=4647 Score = 336 bits (372), Expect = 3e-90 Identities = 213/227 (94%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| || |||||| ||||||||||| || | Sbjct 4543 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GACGACTCGTGCTTACTAGGACTT-C 4486 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 4485 CTCGTTGAAGACAAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCAAAGATT 4426 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||| | Sbjct 4425 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATTAGTGTAGCGCACGTGTG 4366 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4365 GCCCAGAACATCTACGGGCATCACAGACCTGTTATTGCCTCAAACTT 4319 >seq25 Length=6347686 Score = 280 bits (310), Expect = 2e-73 Identities = 204/230 (89%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || ||||||||||||| |||||||| ||||| |||||||||| ||||||||||||| || Sbjct 239032 TAAAAAGGGCAGGGACATAGTCAACACGAGCA-GATGACTCGCACTTACTAGGAATT-CC 239089 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATTA 120 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 239090 TCGTTGAAAACCAAGAATTGCAATGATCTATCCCCATCACGATGAAATTTTCAAAGATTA 239149 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | ||| ||| | | ||||||| ||| | || |||||||||| ||||||||||| |||||| Sbjct 239150 CTCGG-CCTATTG-CCAAGGTTATATATTCATTGAATACATTAGTGTAGCGCGTGTGCGG 239207 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230 |||| || |||||||||||||| ||||||||||||||||| ||| ||||| Sbjct 239208 CCCAAAATATCTAAGGGCATCATAGACCTGTTATTGCCTCGAACATCCGT 239257 >seq4 Length=11052854 Score = 279 bits (308), Expect = 8e-73 Identities = 219/257 (85%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 10306461 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 10306518 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTC-AAAGATT 119 |||||||||||||||||| || |||||| ||||||||||| ||||||||| ||||||| Sbjct 10306519 CTCGTTGAAGACCAACAAATGTAATGATTTATCCCCATCATAATGAAATTTTTAAAGATT 10306578 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | || || | || ||| || |||||||||||||||||||||||||| | | ||||| Sbjct 10306579 ATCCAGATATATCAACCATGGCTATAGACTCGTTGAATACATCAGTGTAATGTGTGTGCG 10306638 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||| ||||||||||||||||||| |||| |||| |||||||| | || || |||| Sbjct 10306639 GCCCAAAACATCTAAGGGCATCACAAACCTATTATCGCCTCAAAACTTTGTCGCTTAAAT 10306698 Query 240 GGCCAT-CTCCCTCGAA 255 || ||| |||||| || Sbjct 10306699 GGACATGGTCCCTCTAA 10306715 >seq1387 Length=10348 Score = 277 bits (306), Expect = 3e-72 Identities = 178/192 (93%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATTACCCG 124 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 10348 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCAAAGATTACCCG 10289 Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCA 184 | |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| Sbjct 10288 GGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACTTCAGTGTAGCGCGGGTGCGGCCCA 10229 Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA 244 ||||||||||||||||||| |||||| ||||||||||||||| |||||||||| ||||| Sbjct 10228 AAACATCTAAGGGCATCACAAACCTGTAATTGCCTCAAACTTCTGTGGCCTAAACGGCCA 10169 Query 245 T-CTCCCTCGAA 255 | |||||| || Sbjct 10168 TAGTCCCTCTAA 10157 >seq267 Length=563285 Score = 242 bits (268), Expect = 6e-62 Identities = 144/149 (97%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATTACCCGGACCTG 130 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 377428 CCAACAATTGCAATGATCTATCTCCATCACGATGAAATTTTCAAAGATTACCCGGGCCTG 377369 Query 131 TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377368 TCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 377309 Query 191 CTAAGGGCATCACAGACCTGTTATTGCCT 219 ||||||||||||||||||||||||||||| Sbjct 377308 CTAAGGGCATCACAGACCTGTTATTGCCT 377280 >seq1587 Length=11037 Score = 223 bits (246), Expect = 5e-56 Identities = 159/180 (88%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 82 CAATGATCTATCCCCATCACGATGAAATTT-CAAAGATTACCC----GGACCTGTCGGCC 136 ||||||| |||||||||||||||||||||| ||| |||||||| || || ||||||| Sbjct 10526 CAATGATTTATCCCCATCACGATGAAATTTTCAATGATTACCCACCCGGGCCAGTCGGCC 10467 Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 |||| ||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||| Sbjct 10466 AAGGCTATAGACTCGTTGAATACATTAGTGCAGCACGCGTGCGGTCCAGAACATCTAAGG 10407 Query 197 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||| || Sbjct 10406 GCATCAAAGACCTGTTATTGCCTCTAACTTCCGTGGCCTAAATGGCCATAGTCCCTCTAA 10347 >seq273 Length=543377 Score = 203 bits (224), Expect = 5e-50 Identities = 169/202 (84%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 471464 GCTTACTAGGAATT-CCTCGTTGAAGACCAACAGTTGCAATGATCTATCTCCATCATGAT 471522 Query 105 GAAA-TTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCA 163 |||| ||| ||||||||| ||| | | ||||| || ||||||||||||||||||||| Sbjct 471523 GAAATTTTTAAAGATTACTCGGGCAT---GGCCAGGGCTATAGACTCGTTGAATACATCA 471579 Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||| | | ||| || ||| ||||| |||||| | | |||| ||||||||||| ||| Sbjct 471580 ATGTAGTGTGTGTGTGG-CCAAAACATTTAAGGGTGTGATAGACTTGTTATTGCCTTAAA 471638 Query 224 CTTCCGTGGCCTAAAAGGCCAT 245 ||| | |||||||| |||||| Sbjct 471639 CTTACATGGCCTAAGCGGCCAT 471660 >seq62 Length=3435397 Score = 172 bits (190), Expect = 8e-41 Identities = 105/111 (95%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3310989 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGACATCACAG 3310930 Query 206 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||||||||||| |||||||||| |||||| |||||| || Sbjct 3310929 ACCTGTTATTGCCTCAAACTTCYGTGGCCTAAACGGCCATAGTCCCTCTAA 3310879 >seq806 Length=23448 Score = 127 bits (140), Expect = 3e-27 Identities = 78/82 (95%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC 241 Query 235 TAAAAGGCCAT-CTCCCTCGAA 255 |||| |||||| |||||| || Sbjct 240 TAAACGGCCATAGTCCCTCTAA 219 >seq230 Length=814988 Score = 87.8 bits (96), Expect = 3e-15 Identities = 76/90 (84%), Gaps = 7/90 (8%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| | ||| |||||||||| | ||| |||||| | Sbjct 443750 GTACAAAGGGCAGGGACATAATCAT-GTGAG-TTGATGACTCACACTT----GGAATT-C 443802 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCT 90 || ||||||||||||||||||||||||||| Sbjct 443803 CTTGTTGAAGACCAACAATTGCAATGATCT 443832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751973752145