Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1387 122 5e-26 seq327 116 2e-24 seq20 107 1e-21 >seq1387 Length=10348 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||| || ||||| || ||||| | Sbjct 701 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAAAGCAACATTCACT 642 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| ||||||||||||||||||| || Sbjct 641 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTTGA 585 >seq327 Length=402351 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| | |||||| | |||||| | Sbjct 291384 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGTCGAGTCCTGAAAGCAACATCCGTC 291325 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| || ||||| ||||| |||| |||||| ||||||||||||||||||| || Sbjct 291324 GATCCCTGGTTGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTTGA 291268 Score = 114 bits (126), Expect = 7e-24 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| |||||||||| ||||| || |||||| ||| Sbjct 97997 AACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCACCG 97938 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | || ||||| |||| ||||||||||| || |||||||||||||||| || Sbjct 97937 ATCCTTGGTAGGCATCATTTATGGTTAAGACTAGGATGGTATCTGATCGTCTTTGA 97882 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| | ||||| || ||||| | Sbjct 124517 GAACCCAAAGACTTTGATTTCTCTTAAGGTGCTGGCAGAGTCCTAAAAGCAACATTTGTC 124458 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||| |||| |||| |||| |||| | |||||||||||||| |||| || Sbjct 124457 AATCCCTGGTCAGCATCATTTATGGTTGAGACAAGGACGGTATCTGATCATCTTTGA 124401 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| |||||||||||||||| | ||||| || | ||||| || |||||| || Sbjct 193124 GAATCCAAAGACTTTGATTTTTGATAAGGAGCTGGCGGAGTCCTAAAAGCAACATCCACC 193065 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | |||||||| ||||| ||| |||||| || || ||||| ||||| |||| Sbjct 193064 GATCCGTGGTCGGCATCGTTTATTGTTGAGACTAGGATGGAATCTGGTCGTCGTCGA 193008 Score = 86.0 bits (94), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTC-AAAATGATAACATCGC 58 ||| ||||||||||| |||| | ||||| || | ||||| |||| || |||||| Sbjct 314858 GAATCCAAAGACTTTTATTTTTGATAAGGAGCTTGGTAGAGTCCAAAAAGA-AACATCCA 314800 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 |||||| |||||||| ||||| ||| |||||| || |||||||||||||||||| Sbjct 314799 ACGATCCGGGGTCGGCATCGTTTATTGTTGAGACTAGGATGGTATCTGATCGTCTTCG 314742 >seq20 Length=7206814 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||| ||||||||||| ||||||||| ||||| || |||| | || Sbjct 1671217 GAACCCAAAGAATTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACACCCGCC 1671276 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | |||||||| ||||| |||| |||||| || ||||||||||| ||||||| Sbjct 1671277 GATCCTTGGTCGGCATCGTTTATGGTTGAGACTAGGATGGTATCTGATCATCTTCGA 1671333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278390596170