Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08]
3,603 sequences; 804,647,751 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 122 5e-26
seq327 116 2e-24
seq20 107 1e-21
>seq1387
Length=10348
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| ||||||| || ||||| || ||||| |
Sbjct 701 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAAAGCAACATTCACT 642
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||| ||||| |||| |||||| ||||||||||||||||||| ||
Sbjct 641 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTTGA 585
>seq327
Length=402351
Score = 116 bits (128), Expect = 2e-24
Identities = 96/117 (82%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||| | |||||| | |||||| |
Sbjct 291384 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGTCGAGTCCTGAAAGCAACATCCGTC 291325
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| || ||||| ||||| |||| |||||| ||||||||||||||||||| ||
Sbjct 291324 GATCCCTGGTTGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTTGA 291268
Score = 114 bits (126), Expect = 7e-24
Identities = 95/116 (82%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||||||||||||||||||||| |||||||||| ||||| || |||||| |||
Sbjct 97997 AACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCACCG 97938
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| | || ||||| |||| ||||||||||| || |||||||||||||||| ||
Sbjct 97937 ATCCTTGGTAGGCATCATTTATGGTTAAGACTAGGATGGTATCTGATCGTCTTTGA 97882
Score = 95.1 bits (104), Expect = 7e-18
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||| | ||||| || ||||| |
Sbjct 124517 GAACCCAAAGACTTTGATTTCTCTTAAGGTGCTGGCAGAGTCCTAAAAGCAACATTTGTC 124458
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| ||| |||| |||| |||| |||| | |||||||||||||| |||| ||
Sbjct 124457 AATCCCTGGTCAGCATCATTTATGGTTGAGACAAGGACGGTATCTGATCATCTTTGA 124401
Score = 86.0 bits (94), Expect = 3e-15
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||| |||||||||||||||| | ||||| || | ||||| || |||||| ||
Sbjct 193124 GAATCCAAAGACTTTGATTTTTGATAAGGAGCTGGCGGAGTCCTAAAAGCAACATCCACC 193065
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||| | |||||||| ||||| ||| |||||| || || ||||| ||||| ||||
Sbjct 193064 GATCCGTGGTCGGCATCGTTTATTGTTGAGACTAGGATGGAATCTGGTCGTCGTCGA 193008
Score = 86.0 bits (94), Expect = 3e-15
Identities = 92/118 (78%), Gaps = 3/118 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTC-AAAATGATAACATCGC 58
||| ||||||||||| |||| | ||||| || | ||||| |||| || ||||||
Sbjct 314858 GAATCCAAAGACTTTTATTTTTGATAAGGAGCTTGGTAGAGTCCAAAAAGA-AACATCCA 314800
Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116
|||||| |||||||| ||||| ||| |||||| || ||||||||||||||||||
Sbjct 314799 ACGATCCGGGGTCGGCATCGTTTATTGTTGAGACTAGGATGGTATCTGATCGTCTTCG 314742
>seq20
Length=7206814
Score = 107 bits (118), Expect = 1e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||| ||||||||||| ||||||||| ||||| || |||| | ||
Sbjct 1671217 GAACCCAAAGAATTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACACCCGCC 1671276
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||| | |||||||| ||||| |||| |||||| || ||||||||||| |||||||
Sbjct 1671277 GATCCTTGGTCGGCATCGTTTATGGTTGAGACTAGGATGGTATCTGATCATCTTCGA 1671333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278390596170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |