Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1387 217 3e-54 seq327 203 6e-50 seq20 187 5e-45 seq2418 179 7e-43 seq4 143 5e-32 seq140 123 5e-26 seq93 104 4e-20 seq39 82.4 1e-13 seq46 80.6 5e-13 >seq1387 Length=10348 Score = 217 bits (240), Expect = 3e-54 Identities = 199/248 (80%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| ||| | |||||||||||| Sbjct 338 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTYTGTATACATTAGCAT 397 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 398 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGTGTAATGAT 456 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 || ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 457 TACCAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 516 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||| ||||||| ||||||| Sbjct 517 GAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCTTTAATCA-AGAACGAAT 575 Query 311 GTTAGGGG 318 ||| |||| Sbjct 576 GTTGGGGG 583 >seq327 Length=402351 Score = 203 bits (224), Expect = 6e-50 Identities = 213/278 (77%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 || |||| ||||| | | || | || | || |||||||||| ||||||||||| || Sbjct 97603 TGGCCTTAACTGGCCGGGTCGTGCHTCCGGTGCTGTTACTTTGAAGAAATTAGAGTGCTC 97662 Query 100 AAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| |||| ||||| | ||||| |||||||| |||| | |||||| | ||| | Sbjct 97663 AAAGCAAGCCTATGCTCTGTATACAATAGCATGGGATAACATCATAGGATTT-HGGTCTT 97721 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||| ||||| | ||| | ||||||||||| ||||| ||||||||| | |||| Sbjct 97722 ATTACGTTGGCCTTCGGGATTGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTAT 97781 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | || || ||||||||||||||||||||||| |||| ||| ||||||||||| || Sbjct 97782 TTCATAGTTAGAGGTGAAATTCTTGGATTTATGAAAGAHGAACCACTGCGAAAGCATTTG 97841 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGG 316 |||| ||||||||||||||||| || |||||||| || Sbjct 97842 CCAATGATGTTTTCATTAATCA-AGATCGAAAGTTGGG 97878 Score = 194 bits (214), Expect = 3e-47 Identities = 194/248 (78%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT-ACATTAGCAT 130 || |||||||||| ||||||| || ||||| || |||| |||| | | |||||||||| Sbjct 192761 CTGTTACTTTGAAGAAATTAGCATGCTCAAATCAAGCCTACGCTCTATTTACATTAGCAT 192820 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||| | |||||| | ||| ||||| |||||| | ||| | | |||||||| Sbjct 192821 GGAATAACATCATAGGATTTT-GGTCCTATTATGTTGGCCTTCGGGATCACAGTAATGAT 192879 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| |||||| || | |||| || |||||||||||||||||||||||||| Sbjct 192880 TAATAGGGACAGTCGGAGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 192939 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| ||| ||||||||| | || ||||||||||||||| |||| | |||| ||| Sbjct 192940 GAAAGATGAACCACTGCGAAATCATTTGCCAAGGATGTTTTCAATAATGA-AGAACAAAA 192998 Query 311 GTTAGGGG 318 ||| |||| Sbjct 192999 GTTGGGGG 193006 Score = 120 bits (132), Expect = 6e-25 Identities = 109/136 (80%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| |||||| || | |||| || |||||||||||||||||| Sbjct 314605 GTAATGATTAACAGGGACAGTCGGAGGCATTCATATTTCATAGTCAGAGGTGAAATTCTT 314664 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 ||||||| |||| ||| ||||||||| | || ||| |||||||||||||||| | Sbjct 314665 GGATTTAGGAAAGATGAACCACTGCGAAATCATTTGCCATGGATGTTTTCATTAATGA-A 314723 Query 303 GAACGAAAGTTAGGGG 318 |||| |||||| |||| Sbjct 314724 GAACAAAAGTTGGGGG 314739 Score = 114 bits (126), Expect = 2e-23 Identities = 85/99 (86%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || ||||||||||||||||||||||||| ||||| ||| | ||||||||| Sbjct 291164 GTATTTCATAATCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACCAHTGCGAAAGCA 291223 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || |||||||||||||||||||||| ||||||||||| Sbjct 291224 TTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 291261 >seq20 Length=7206814 Score = 187 bits (206), Expect = 5e-45 Identities = 192/248 (77%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| ||| | |||||||||||| Sbjct 1671580 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGGATACATTAGCAT 1671521 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | ||| ||||| |||| | | ||| | |||||||| Sbjct 1671520 GGGATAACATCATAGGATTTT-GGTCCTATTACGTTGACCTTTGGGATCAGAGTAATGAT 1671462 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 | | ||||||| ||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 1671461 CGACAAGGATAGTTGGGGGCATTCGTATTTCATAGTCARAGGTGAAATTCTTGGATTTAT 1671402 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||| ||||||||| ||||| || |||| ||||||||||||||||| ||| |||| Sbjct 1671401 GAAAGGAGAACTACTGCAAAAGCATTTGCCAATGATGTTTTCATTAATCA-AGAATGAAA 1671343 Query 311 GTTAGGGG 318 ||||||| Sbjct 1671342 ATTAGGGG 1671335 >seq2418 Length=4647 Score = 179 bits (198), Expect = 7e-43 Identities = 169/213 (79%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||||| Sbjct 4104 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 4163 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | ||||| | ||| ||||| |||||| ||| || ||||||||||| Sbjct 4164 ATAACATCCTAGGATTTT-GGTCCTATTATGTTGGCCATCGGGATCGGAGTAATGATTAA 4222 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||||||| || | | ||||| || |||||||||||||||||||||||||| | Sbjct 4223 CAGGGATAGTCAGGAGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 4282 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 |||| ||| ||||||||||| || |||||||| Sbjct 4283 AGACGAACCACTGCGAAAGCATTTGCCAAGGAT 4315 >seq4 Length=11052854 Score = 143 bits (158), Expect = 5e-32 Identities = 182/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCATGGA 133 |||||||||||||||||||||| |||||||| | || ||| | | |||||||||||| Sbjct 10307350 TTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGTCTACACTCTAGAAACATTAGCATGGG 10307291 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | ||| ||||| | ||| | ||||| |||||||||| Sbjct 10307290 ATAACATCATAGGATTTT-GGTCCTATTACGGTGGCCTTTAGGATTAAAGTAATGATTAG 10307232 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 | ||| | | ||||| || || || || |||| |||| ||||| |||||||||| | Sbjct 10307231 CAAGGACAATTGGGGGAGTTCGTGTTTCATAGTCAAAGGTAAAATTATTGGATTTATGAA 10307172 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA-GT 312 | | ||| ||| ||| | || |||||||||||||||||||||| |||| ||| | Sbjct 10307171 ATATGAACCACTATAAAAACATTTGCCAAGGATGTTTTCATTAATCA-AGAACAAAATTT 10307113 Query 313 TAGGG 317 ||||| Sbjct 10307112 TAGGG 10307108 >seq140 Length=1530109 Score = 123 bits (136), Expect = 5e-26 Identities = 94/110 (85%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| || Sbjct 1 AGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAA 60 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 | ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 61 CCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 109 >seq93 Length=2437659 Score = 104 bits (114), Expect = 4e-20 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACAT 124 |||| || |||||||||| ||||||||||| |||||||| |||| |||| | |||||| Sbjct 1536113 CCAGTGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACAT 1536172 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||| |||| | |||||| | |||| |||| ||||| | ||| | || Sbjct 1536173 TAGCATGGGATAACATCATAGGA-TTTCGGTCTTATTACGTTGGCCTTCGGGATTGGAGT 1536231 Query 185 AATGATTAATAGGGATAGT 203 ||||||||||||||| ||| Sbjct 1536232 AATGATTAATAGGGACAGT 1536250 >seq39 Length=4819851 Score = 82.4 bits (90), Expect = 1e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 1232995 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1233054 Query 131 GGAATAATAGAATAGGA 147 || |||| | |||||| Sbjct 1233055 GGGATAACATCATAGGA 1233071 >seq46 Length=4379519 Score = 80.6 bits (88), Expect = 5e-13 Identities = 90/120 (75%), Gaps = 8/120 (7%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAG--GTGAAATTC 240 |||||||||||||| || | |||||| ||||| | ||| || ||||||||| Sbjct 2527449 GTAATGATTAATAGAGACAACCGGGGGC------ATTCACATTTCATAGTGGTGAAATTC 2527502 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||||||||| || | || ||| | ||||| || ||||| |||||||||||||||| Sbjct 2527503 TTGGATTTATGAAATATGAATCACTACAAAAGCATTTGCCAAGAATGTTTTCATTAATCA 2527562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915167025344