Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3444 113 4e-23 seq2900 80.6 3e-13 >seq3444 Length=1094 Score = 113 bits (124), Expect = 4e-23 Identities = 93/111 (84%), Gaps = 7/111 (6%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || |||||| |||||||||| | ||||||||||||||||| Sbjct 355 GGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTGCAAGCCTGCGAAAAGCTACGGG 296 Query 68 GA-TTGGCACATACGAA---TTGATCCGTAGATATCCGAATGGGGCAACCC 114 || |||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct 295 GAGTTGGCA---ACGAAACTTTGATCCGTAGATATCCGAATGGGGAAACCC 248 >seq2900 Length=1624 Score = 80.6 bits (88), Expect = 3e-13 Identities = 88/116 (76%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| | ||||||||||| ||| |||||||||||||||||| | ||||||| ||| Sbjct 1619 GGCACATGGTGGATGCCTTGGCGTCAAGAGGCGAAGAAGGACGTGGAAGGCTGCGATAAG 1560 Query 61 CTACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 | |||||| | || | | |||| ||| ||| |||||||||||||||||| Sbjct 1559 CCTCGGGGAGCCGTCAAGCAGGCTTTGAACCGGGGATTTCCGAATGGGGCAACCCG 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476783357743