Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3603 269 7e-70 seq97 206 7e-51 seq83 163 7e-38 seq93 143 7e-32 seq77 100 7e-19 seq148 91.5 4e-16 >seq3603 Length=163330 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 114436 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 114377 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114376 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 114317 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 114316 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 114257 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 114256 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 114197 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 114196 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 114143 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 114142 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 114100 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 114099 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 114042 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 140805 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 140864 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140865 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 140924 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 140925 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 140984 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 140985 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 141044 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 141045 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 141098 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 141099 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 141141 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 141142 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 141199 >seq97 Length=2389559 Score = 206 bits (228), Expect = 7e-51 Identities = 294/418 (70%), Gaps = 28/418 (7%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||||| || || ||||||| ||| ||| |||||| || |||||| Sbjct 1389872 GCATCTTCACAAACATGTCTATTTCACCGAGCCTCTCTCCGAGACACTTCCCAGATCGTT 1389813 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1389812 ACGCCTTACGTGCGGGTCGGAACTTACCCDACAAGGAATTTCGCTACCTTAGGACCGTTA 1389753 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||||| |||||||| || |||||| | ||| ||| | | | || | ||| Sbjct 1389752 TAGTTACGACCGCCGTTCACTAGGGCTTTGGTCACCGGCTCCCCTGTCATCAGGTCACCA 1389693 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||| ||| |||||||||||| ||| |||| | ||| || ||| Sbjct 1389692 ACTTCCTTGACCTTCCGRCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1389633 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 | ||| |||| |||| |||||||||||| |||||||| || ||||| Sbjct 1389632 GTGGAGACATGTGGTTTTGATAAACAGTCGCTCGGGCCTGGTCACTACGACC------CC 1389579 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 1389578 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 1389536 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| | | || ||| |||||||| |||| | |||| Sbjct 1389535 TTGCCGAGTTCCTTAGAGAGAGTTGCCACGTGC-CCTAGGTATTCTATACCTACCCAC 1389479 >seq83 Length=2710307 Score = 163 bits (180), Expect = 7e-38 Identities = 238/340 (70%), Gaps = 21/340 (6%) Strand=Plus/Minus Query 80 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTAC 139 |||||||||||| ||||| | |||||||||||||||||||||||| |||| ||||| Sbjct 693240 TCGTGCAGGTCGCTACTTATGCRACAAGGAATTTCGCTACCTTAGGATAGTTAGAGTTAC 693181 Query 140 GGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAAC 199 ||| ||||||| ||||||||| || | ||| ||| || | | | || Sbjct 693180 TGCCACCGTTTATCGGGGCTTCCATTCAAAGC------TTATAATACTTCTCCTTTCGAC 693127 Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||||| |||||||||||| |||| || |||||| | || | || ||||||| ||| Sbjct 693126 CTTCCAGCACCGGGCAGGTGTCAGACTCTATACATYGTGTTACCACTTAGCAGAGTCCTG 693067 Query 260 TGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCA 319 |||||||||||||||||||| | |||||||| | | | | | | | | || Sbjct 693066 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCTGCTTTCCTAACCAAA---AGAT 693010 Query 320 AGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTC 379 || |||| || |||||| ||||||||| | | ||||||| ||||| Sbjct 693009 AGGAGAGCACC------------CCGTCTCCCAAAGTTACGGGGTCATTTTGCCAAGTTC 692962 Query 380 CTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||| | ||||||||||||||| | | || ||||||| Sbjct 692961 CTTCGACATGGTTCTCTCAAGCGCCCTAGCATACTCTACC 692922 >seq93 Length=2437659 Score = 143 bits (158), Expect = 7e-32 Identities = 187/257 (73%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 || ||||||| || || |||||||| || ||| | ||| || ||| ||||||| Sbjct 148652 CACCTTCACAAATATGTCTATTTCACTAAGCCTCTC-TCTAGATAGTGCCCAAATCGTTA 148594 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 || |||||||| ||||||||||||| ||||| |||||| |||||||||||||| |||| Sbjct 148593 TACCTTTCGTGCAAGTCGGAACTTACCTGACAAAGAATTTTGCTACCTTAGGACCATTAT 148534 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCCC 189 |||||| ||||||| || ||||||| || | | || | || | ||| Sbjct 148533 AGTTACGATCGCCGTTCACTGGGGCTTTAGTCGCCATTTCCTCTCTTATCAGGTCACCAA 148474 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || |||||||||||| |||||||||||| ||| |||| | ||| || |||| Sbjct 148473 CTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTG 148414 Query 250 CAGAGTGCTGTGTTTTT 266 ||||| || ||||||| Sbjct 148413 CAGAGACCTATGTTTTT 148397 >seq77 Length=2932519 Score = 100 bits (110), Expect = 7e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||| ||| ||| || |||||||| ||| ||| |||||||||||| ||| ||| ||||| Sbjct 666196 GAGGCAGTGCCCAGATTGTTACGCCTTTCCTGCGGGTCGGAACTTAACCGGCAAAGAATT 666137 Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTT 160 | |||| |||||||| ||||| |||| |||||||||| || | || || Sbjct 666136 TTGCTATCTTAGGACTGTTATAGTTATGGCCGCCGTTCACTGAGGTTT 666089 >seq148 Length=1487851 Score = 91.5 bits (100), Expect = 4e-16 Identities = 193/281 (69%), Gaps = 38/281 (14%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 ||| ||| || || ||||||||||||| ||| | || |||||||| || | |||| Sbjct 167030 ATCATCATAGAGAATTCAATTTCACTGGGTC-CATGTTGAGACAGCAGGGCAGTTCTTAC 167088 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC------ 128 | ||||||||| | || ||||| | ||||||||||| |||||||||| ||| Sbjct 167089 AC-ATTCGTGCACGCCGCTACTTATGCAACAAGGAATTTTGCTACCTTAGTACCTTGGGA 167147 Query 129 -------GTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA-TCAAGAGCTTCGCGTTA 180 |||||| ||| || | ||||| | ||| ||| | ||||| |||| || Sbjct 167148 CAGTTGAGTTATTATTA---CCACTGTTTATCAGGGATTCCATTCAAG-GCTT----ATA 167199 Query 181 GCTAACCCCATCAAT-TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 | || | || | | ||||||| ||||| |||| |||| || |||||||| Sbjct 167200 AC--ACTTC-TCTTTCTGACCTTCCAGCACCATGCAGTTGTCAGACTCTATACGT----- 167251 Query 240 TTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCA 280 |||| ||| ||| | |||||||||||||||||| ||| Sbjct 167252 ----TGTTAGCA-AGTCCCGTGTTTTTAATAAACAGTTGCA 167287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260754573376