Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3603 338 1e-90 seq97 293 5e-77 seq93 206 6e-51 seq83 199 8e-49 seq77 136 8e-30 >seq3603 Length=163330 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 114436 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 114377 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114376 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 114317 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 114316 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 114257 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 114256 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 114197 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 114196 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 114137 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 114136 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 114085 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 140805 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 140864 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140865 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 140924 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 140925 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 140984 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 140985 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 141044 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 141045 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 141104 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 141105 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 141156 >seq97 Length=2389559 Score = 293 bits (324), Expect = 5e-77 Identities = 281/356 (79%), Gaps = 14/356 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | ||||||||||| || | |||||| | |||| |||||| Sbjct 1389872 GCATCTTCACAAACATGTCTATTTCACCGAGCCTCTCTCCGAGACACTTCCCAGATCGTT 1389813 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1389812 ACGCCTTACGTGCGGGTCGGAACTTACCCDACAAGGAATTTCGCTACCTTAGGACCGTTA 1389753 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC- 185 |||||||| |||||||| ||| |||||| | |||| | || || || | ||| || Sbjct 1389752 TAGTTACGACCGCCGTTCACTAGGGCTT-TGGTCACCGGCTCCCCTG-TC-ATCAGGTCA 1389696 Query 186 ------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGAC 239 |||| ||||||| ||| |||||||||||||| || |||||| ||||| |||| Sbjct 1389695 CCAACTTCCTTGACCTTCCGRCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGAC 1389636 Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTG 296 || | || || |||| ||||| |||||||||||| |||||| || || || ||| Sbjct 1389635 TTTGTGGAGACATGTGGTTTTGATAAACAGTCGCTCGGGCCTGGTCACTACGACCCCCTT 1389576 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1389575 TGTGAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 1389521 >seq93 Length=2437659 Score = 206 bits (228), Expect = 6e-51 Identities = 191/239 (80%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||| |||||||||||||||| |||||||||| ||||||||||||| ||||| |||||| Sbjct 148613 AGATAGTGCCCAAATCGTTATACCTTTCGTGCAAGTCGGAACTTACCTGACAAAGAATTT 148554 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGT--TCACTGC 165 |||||||||||||| ||||||||||| ||||||| |||||||||| ||| || | | Sbjct 148553 TGCTACCTTAGGACCATTATAGTTACGATCGCCGTTCACTGGGGCTTTAGTCGCCATTTC 148494 Query 166 TTCGATTGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222 || || || | || | |||| ||||||| |||| |||||||||||||| || Sbjct 148493 CTCTCTT-ATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 148435 Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 |||||| ||||| |||||| ||||| |||| |||||||||| || ||| ||||||| Sbjct 148434 ATACATGGTCTTACGACTTTGCAGAGACCTATGTTTTTGGTGAAGTGTCAAGTGGGCCT 148376 >seq83 Length=2710307 Score = 199 bits (220), Expect = 8e-49 Identities = 225/303 (74%), Gaps = 20/303 (7%) Strand=Plus/Minus Query 74 TCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTAC 133 |||||| ||||| ||||| | |||||||||||||||||||||||| |||| |||||| Sbjct 693240 TCGTGCAGGTCGCTACTTATGCRACAAGGAATTTCGCTACCTTAGGATAGTTAGAGTTAC 693181 Query 134 GGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTA-- 191 ||| ||||||| ||||||| |||| |||| | | || || |||| Sbjct 693180 TGCCACCGTTTATCGGGGCTTCCATTCAAAGCTTATAATACT--------TCTCCTTTCG 693129 Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 |||||||||||||||||||| ||||| |||||||| || || | |||||||||| || Sbjct 693128 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATYGTGTTACCACTTAGCAGAGTCC 693069 Query 252 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGACA 305 ||||||||| |||||||||||| ||| | | ||| || | | | ||| | Sbjct 693068 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCTGCTTTCCTAACCAAAAGATA 693009 Query 306 G----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 | ||||||| |||||| ||||||||||||||||||||| |||||||| || ||| Sbjct 693008 GGAGAGCACCCCGTCTCCCAAAGTTACGGGGTCATTTTGCCAAGTTCCTTCGACATGGTT 692949 Query 362 CTC 364 ||| Sbjct 692948 CTC 692946 >seq77 Length=2932519 Score = 136 bits (150), Expect = 8e-30 Identities = 96/110 (87%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 45 TTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAA 104 ||||| ||||||||| || |||||||||||| |||||||||||||||| ||| ||| ||| Sbjct 666198 TTGAGGCAGTGCCCAGATTGTTACGCCTTTCCTGCGGGTCGGAACTTAACCGGCAAAGAA 666139 Query 105 TTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||| |||| |||||||| |||||||||| |||||||||| |||| || || Sbjct 666138 TTTTGCTATCTTAGGACTGTTATAGTTATGGCCGCCGTTCACTGAGGTTT 666089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062361721728