Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq806 264 2e-68 seq1387 259 8e-67 seq327 255 9e-66 seq20 244 2e-62 seq4 210 3e-52 seq1587 165 1e-38 seq62 141 1e-31 seq267 109 9e-22 seq2418 104 4e-20 seq25 93.3 7e-17 >seq806 Length=23448 Score = 264 bits (292), Expect = 2e-68 Identities = 197/230 (86%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 30 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGC 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 300 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC 241 Query 90 TGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTA 148 | | | | |||||||||||||||||| ||| || | || | ||| ||| Sbjct 240 TAAACGGCCATAGTCCCTCTAAGAAGCTGGCCGTGAAGGGTGCCTCCACATACCTAGTTA 181 Query 149 GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 | ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 180 GTAGGCTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATYGCTCCACCAACTAAGA 121 Query 209 ACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 120 ACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 71 >seq1387 Length=10348 Score = 259 bits (286), Expect = 8e-67 Identities = 214/259 (83%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||| |||||||||| ||||||||||||||||||| | Sbjct 10266 ACTCGTTGAATACTTCAGTGTAGCGCGGGTGCGGCCCAAAACATCTAAGGGCATCACAAA 10207 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||| ||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 10206 CCTGTAATTGCCTCAAACTTCTGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTGGCC 10147 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | | ||| | |||| |||| |||||||||||||||| |||| ||||||| Sbjct 10146 ACGGAGGGT-GTCTCCGCATAGCTAGTTAGTAGGTTAAGGTCTCGTTTGTTAACGGAATT 10088 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||| ||||| ||||||||| || |||||||||||||||| ||||| Sbjct 10087 AACCAGACAAATCGCTCCCCCAACAAAGAACGGCAATACACCACCACCCATAGACTCAAG 10028 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 10027 AAAGAGCTCTCAGTCTGTC 10009 >seq327 Length=402351 Score = 255 bits (282), Expect = 9e-66 Identities = 216/264 (82%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | ||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 124908 ACTCGTTGACTACATCAGTGTCGCACGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 124849 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC--AG 119 ||||||||||||||||| || | | | || | | | |||||||||||||||||| || Sbjct 124848 CCTGTTATTGCCTCAAATTTACGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTGAAG 124789 Query 120 CCACCAACC-ATAGTCGATGGG----GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 | | | | || | | |||| |||| ||| | ||||||||||||||| || Sbjct 124788 CTGGCCGCGGAGGGTGCCTCCGCATAGCTAGTTAGTAGGCTGAGGTCTCGTTCGTTAACG 124729 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||| Sbjct 124728 GAATTAACYAGACAAATCGCTCCACCAACTAAGAACGGTCATGCAGCACCACCCATAGAA 124669 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| ||| |||||| Sbjct 124668 TCAAGAAAGAGCTCTCAGTCTGTC 124645 Score = 246 bits (272), Expect = 5e-63 Identities = 190/226 (84%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 33 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGG 92 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || | Sbjct 193478 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCCCAAACTTCCATGGCCTAG 193419 Query 93 AAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCA 151 | | | |||||||||||||||||| | | || | || |||| |||| | Sbjct 193418 ACGACCATAGTCCCTCTAAGAAGCTGATCGCGGACGGTGCCTCTRCATAGCTAGTTAGTA 193359 Query 152 GGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACG 211 || | || |||| ||||||| |||||||||||||||||||| ||||||||||||| |||| Sbjct 193358 GGCTGAGATCTCATTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAARAACG 193299 Query 212 GCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 193298 GCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGT 193253 Score = 241 bits (266), Expect = 2e-61 Identities = 209/258 (81%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||| ||||||||| ||||| |||||| ||||||| || ||| Sbjct 98382 ACTCGTTGAATACATCAGTGTAACGCGCGTGCAGCCCAAAACATCAAAGGGCACCATAGA 98323 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 || ||||||||||||||||||| | | || | | | |||||||||||||||||| | | Sbjct 98322 CCCGTTATTGCCTCAAACTTCCGTGGCCTAAATGGCCATAGTCCCTCTAAGAAGCTGGTC 98263 Query 122 ACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | | | || | || |||||||| | ||||||||||||||| |||||||| Sbjct 98262 GCGGAGGGTGCCTCCGCATAGVTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTA 98203 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 98202 ACCAGACAAATCGCTCCACCAACTAAGAAHGGCCATGCACCACCACCCATAGAATC-AGA 98144 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| ||| ||| || Sbjct 98143 AAGAGCTCTCAGTCTATC 98126 Score = 215 bits (238), Expect = 8e-54 Identities = 184/226 (81%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA 93 |||||||||||||||||||||||| |||||| |||||||| | ||||||| ||| || || Sbjct 315211 GGCCCAGAACATCTAAGGGCATCAAAGACCTATTATTGCCCCGAACTTCCGTTGCCTAGA 315152 Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCAG 152 | | ||||||||||||| |||| | | | | || | |||| ||||||| Sbjct 315151 CGACCATAGTCCCTCTAAAAAGCTGATCGCGGAGGGTGCCTCCACATAGCTAGTTAGCAG 315092 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 | |||| ||| |||||||| |||||||||||||||||||| |||||||||||| ||||| Sbjct 315091 GCTAAGATCTTGTTCGTTAATGGAATTAACCAGACAAATCATTCCACCAACTAAAAACGG 315032 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||||||||||||||| ||| | | |||||| Sbjct 315031 CCGTGCACCACCACCCATAGAATCAAGAAAGTGCTCTTAGTCTGTC 314986 Score = 163 bits (180), Expect = 5e-38 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | | ||||||||||||| ||||||||||||||||||| ||||||| Sbjct 291629 GCTAGTTAGCAGGCTGAAGTCTCGTTCGTTAATGGAATTAACCAGACAAATCGCTCCACC 291570 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| || Sbjct 291569 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAATGAGCTCTCAGTCTATC 291512 >seq20 Length=7206814 Score = 244 bits (270), Expect = 2e-62 Identities = 211/259 (81%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1670836 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1670895 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | |||||||||||||||||| | | Sbjct 1670896 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAATGGCCATAGTCCCTCTAAGAAGCTGGTC 1670955 Query 122 ACCAACCATAGTCGATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | | | | || |||| |||||| | | |||||| |||||||| |||||| Sbjct 1670956 ACTGAGGGT-GCCTCTGCATAGCTAGTTAGCAAGCTGAGGTCTTGTTCGTTAATGGAATT 1671014 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||| Sbjct 1671015 AACTAGACAAATTGCTCCACC----AAGAACAACCATGCACCACCACCCATAGAATCAAG 1671070 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| | |||| Sbjct 1671071 AAAGAGCTCTCAGTTTGTC 1671089 >seq4 Length=11052854 Score = 210 bits (232), Expect = 3e-52 Identities = 207/263 (79%), Gaps = 11/263 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||| | | |||||||||| ||||||||||||||||||| | Sbjct 10306606 ACTCGTTGAATACATCAGTGTAATGTGTGTGCGGCCCAAAACATCTAAGGGCATCACAAA 10306665 Query 62 CCTGTTATTGCCTCAAA-CTTCCATTGGCTGGAAGCCA-ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||| ||| | ||| || | || ||||||||||||||| || Sbjct 10306666 CCTATTATCGCCTCAAAACTTTG--TCGCTTAAATGGACATGGTCCCTCTAAGAAGCTAG 10306723 Query 120 CCACCAACCATAGT----CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 |||| || | || | | |||| |||| ||||| | ||||||||||||| | | Sbjct 10306724 CCACAAA---TGGTGCCCCCACATAGCTAATTAGTAGGTTGATGTCTCGTTCGTTAACAG 10306780 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 |||||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||| Sbjct 10306781 AATTAATTAGACAAATCACTCCACCAACTAAGAACGACCATGCACCAACACTCATAGAAT 10306840 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||| | | |||||| Sbjct 10306841 CAAGAATGAGCTTTTAGTCTGTC 10306863 >seq1587 Length=11037 Score = 165 bits (182), Expect = 1e-38 Identities = 156/198 (79%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||| ||| ||||||||| ||||||||||||||||||||| ||| Sbjct 10456 ACTCGTTGAATACATTAGTGCAGCACGCGTGCGGTCCAGAACATCTAAGGGCATCAAAGA 10397 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||| ||||||| | | || | | | |||||||||||||||||| ||| Sbjct 10396 CCTGTTATTGCCTCTAACTTCCGTGGCCTAAATGGCCATAGTCCCTCTAAGAAGCAGGCC 10337 Query 122 ACCAACCAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | | | || | |||| |||||||| | ||||||||||||||| |||||| Sbjct 10336 GCAGAGGGTGCCTCCGTATAGCTAGTTAGCAGGCTTAGGTCTCGTTCGTTAATAGAATTA 10277 Query 181 ACCAGACAAATCACTCCA 198 |||||||||||| ||||| Sbjct 10276 ACCAGACAAATCGCTCCA 10259 >seq62 Length=3435397 Score = 141 bits (156), Expect = 1e-31 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3310988 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGACATCACAGA 3310929 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 ||||||||||||||||||||| | | || | | | |||||||||||||||||| Sbjct 3310928 CCTGTTATTGCCTCAAACTTCYGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGC 3310874 >seq267 Length=563285 Score = 109 bits (120), Expect = 9e-22 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377352 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 377293 Query 62 CCTGTTATTGCCT 74 ||||||||||||| Sbjct 377292 CCTGTTATTGCCT 377280 >seq2418 Length=4647 Score = 104 bits (114), Expect = 4e-20 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||||||| |||| ||||||||||||||| |||||||||||| Sbjct 4398 ACTCGTTGAATACATTAGTGTAGCGCACGTGTGGCCCAGAACATCTACGGGCATCACAGA 4339 Query 62 CCTGTTATTGCCTCAAACTT 81 |||||||||||||||||||| Sbjct 4338 CCTGTTATTGCCTCAAACTT 4319 >seq25 Length=6347686 Score = 93.3 bits (102), Expect = 7e-17 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||| | Sbjct 239190 AGTGTAGCGCGTGTGCGGCCCAAAATATCTAAGGGCATCATAGACCTGTTATTGCCTCGA 239249 Query 78 ACTTCC 83 || ||| Sbjct 239250 ACATCC 239255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796772188443