Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq327 385 8e-105 seq399 343 3e-92 seq59 288 2e-75 seq1080 237 3e-60 seq1387 178 2e-42 seq15 178 2e-42 seq1963 154 3e-35 seq2237 150 3e-34 seq97 77.0 6e-12 >seq327 Length=402351 Score = 385 bits (426), Expect = 8e-105 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | || |||||||||||||||||||||||||||||| Sbjct 348237 TACTAGGTTGAATTACTATTGCAAC-ACTATCATCAGTAGGGTAAAACTAACCTGTCTCA 348179 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||| Sbjct 348178 CGATGGTCTAAACCCAGCTCACATTCCCTATTGGTGGGTGAACAATCCAACACTTGGCGA 348119 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 348118 ATTCTGCTTCGCAATGATAGGAAGAGCCGACACCGAAGGATCAAAAAGCAACGTHGCTAT 348059 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 348058 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTRACACCTCTAGCTT 347999 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| | || |||||||||||||||||||| |||||| |||| |||||| Sbjct 347998 CAAATTCCACAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 347946 Score = 244 bits (270), Expect = 2e-62 Identities = 163/184 (89%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 || ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 212778 ACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 212719 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGC 229 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct 212718 AACGTCGCTATGAAYRCTTRGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTDAC 212659 Query 230 ACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||||||| ||||||| | | || |||||| || |||||||||| |||||| | || || Sbjct 212658 ACCTCTAGCTTCAAATTCCAAAGGTCTAAAGTATTGATAGGCCACGCTTTCACGTTTCGT 212599 Query 290 ATTC 293 |||| Sbjct 212598 ATTC 212595 Score = 242 bits (268), Expect = 6e-62 Identities = 172/196 (88%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 ||||||||| |||| ||| | |||||||||||| ||||||||||||||||||||||| Sbjct 388335 GTGAACAATTCAACACTTGGCAAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAC 388276 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 ||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||| Sbjct 388275 AGATCAAAAAGCAACGTCACTATGAATGCTTGGCTGCTACAAGCCAGTTATCCCGGTGGT 388216 Query 218 AACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACT 277 ||||||||| ||||||||| | ||||||| || || ||||||||| |||||||||| || Sbjct 388215 AACTTTTCT-GCACCTCTACCTTCAAATTCTGAAGGTCTAAAGGATTGATAGGCCACGCT 388157 Query 278 TTCATGGTTTGTATTC 293 |||| |||||||||| Sbjct 388156 TTCACTGTTTGTATTC 388141 Score = 105 bits (116), Expect = 1e-20 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 115644 ACTGTCATCAATAGGGTAAAACTAACCTATCTCACGACGGTCTAAACCCAGCTCACGTTC 115585 Query 87 CCTATTAGTGGGTGAA 102 || ||| |||| |||| Sbjct 115584 CCCATTGGTGGATGAA 115569 Score = 86.0 bits (94), Expect = 1e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 229 CACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTG 288 |||||||||| ||||||| ||| || |||||||||||||||||||| |||||| |||| | Sbjct 325169 CACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCG 325110 Query 289 TATTC 293 ||||| Sbjct 325109 TATTC 325105 >seq399 Length=188268 Score = 343 bits (380), Expect = 3e-92 Identities = 234/264 (89%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||| Sbjct 87281 TCATCAATAGGGTAAAACTAACCCGTCTCACGACGGTCTAAATCCAGCTCACGTTCCCTA 87340 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || ||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| Sbjct 87341 TTGATGGGTAAACAATCCAACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGG 87400 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||| | || |||||||||||||||||||||| ||||||| ||||||| ||||||||| Sbjct 87401 CATCGGATGAACAAAAAGCAACGTCGCTATGAAAACTTGGCTACCACAAGGCAGTTATCC 87460 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 || |||||||||||||| |||||||||| ||||||| ||| || |||||||||||||||| Sbjct 87461 CTATGGTAACTTTTCTGACACCTCTAGCTTCAAATTYCGAAGGTCTAAAGGATCGATAGG 87520 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || |||||||| |||| |||||| Sbjct 87521 CCGCACTTTCACGGTTGATATTCA 87544 >seq59 Length=3555251 Score = 288 bits (318), Expect = 2e-75 Identities = 223/264 (84%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||| | |||||| ||||| || |||||||| | ||||| ||||||| Sbjct 108944 TCATCATTAGGGTAACATTAACCTATCTCACAACAATCTAAACCTATCTCACATTCCCTA 109003 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||||||||| ||| |||| || ||||| |||||||||||| | || Sbjct 109004 TTGGTGGGTGAACAATCCAACACTTGGTGAAT-CTACTTCGCAATGATAGGAAGAACTGA 109062 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||||| ||||||||| |||||||| || ||||||||||||||||||| |||||| Sbjct 109063 CATTGAAGGATAAAAAAGCAATGTCGCTATAAATGCTTGGCTGCCACAAGCCAATTATCC 109122 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||| |||||||||| ||||||| | || ||||| || | ||||| Sbjct 109123 TTGTGGTAACTTTTCTAACACCTCTAGCTTCAAATTCTAAAGGTCTAAATGACCAATAGG 109182 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||||||||||| ||||||||||| Sbjct 109183 CCACACTTTCATTGTTTGTATTCA 109206 >seq1080 Length=16150 Score = 237 bits (262), Expect = 3e-60 Identities = 159/177 (90%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || ||||||||||||||||||||||||||||||| Sbjct 176 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 118 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||| |||||| |||||||||| ||||||||||||||| || ||| ||| Sbjct 117 TGACGGTCTAAACCTAGCTCATGTTCCCTATTGGTGGGTGAACAATCCMACACTTGGCGA 58 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 ATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 1 >seq1387 Length=10348 Score = 178 bits (196), Expect = 2e-42 Identities = 130/150 (87%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||| |||||||||||| |||| ||||| Sbjct 6189 TACTAGGTTGAATTACTATTGCGAC-ACTATCATCAATAGGGTAAAACTGACCTATCTCA 6131 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 6130 CGATGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGCGA 6071 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||| ||||||||||||||||| Sbjct 6070 ATTCTGCTTCGCAATGATAGGAAGAGCCGA 6041 >seq15 Length=8481880 Score = 178 bits (196), Expect = 2e-42 Identities = 145/175 (83%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||| |||| |||||||||| |||||||||| |||||| ||||||||| |||||| Sbjct 692425 GAATTCTACTTCATAATGATAGGAAAAGCCGACATCAAAGGATTAAAAAGCAATGTCGCT 692366 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||| | |||| |||||||||| | |||| | ||||||||||||||| || ||||| Sbjct 692365 ATGAATGTTTGGTTGCCACAAGCTAATTATACTTGTGGTAACTTTTCTAACATCTCTATT 692306 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||| | |||||||||| ||| || ||| ||||||||| ||||||| Sbjct 692305 TTCAAATTCCGAAAGTCTAAAGGATCCATA-GCTACATTTTCATGGTCTGTATTC 692252 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||||||||||||||||| | ||| | ||| ||||||||| ||||||||| ||| Sbjct 692634 CATTAGTAGGGTAAAACTAACCTATTTCACAATGGTGTAAACCCAGTTCACGTTCCTTAT 692575 Query 92 TAGTGGGTGAACAATCCAACGCTTA 116 || |||| |||||||| ||| |||| Sbjct 692574 TAATGGGCGAACAATCTAACACTTA 692550 >seq1963 Length=6048 Score = 154 bits (170), Expect = 3e-35 Identities = 113/130 (87%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || |||| ||||||||||||||||||||||||| Sbjct 5560 TACTAGGTTGAATTACTATCGCGAC-ACTATCATTAGTAGGGTAAAACTAACCTGTCTCA 5502 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 5501 CAACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGCGA 5442 Query 121 ATTCTGCTTC 130 |||||||||| Sbjct 5441 ATTCTGCTTC 5432 >seq2237 Length=4647 Score = 150 bits (166), Expect = 3e-34 Identities = 112/130 (86%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || ||||||||||||||||||||||||||||| | Sbjct 4263 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTAA 4205 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| ||||||||||||||| | ||||||||| |||||||||||||||||| ||| ||| Sbjct 4204 CGACAGTCTAAACCCAGCTCCCCTTCCCTATTGGTGGGTGAACAATCCAACACTTGGCGA 4145 Query 121 ATTCTGCTTC 130 |||||||||| Sbjct 4144 ATTCTGCTTC 4135 >seq97 Length=2389559 Score = 77.0 bits (84), Expect = 6e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||||||||| ||||| Sbjct 1390442 CTGTCTCAYGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGTGAACAGCCCAACC 1390383 Query 113 CTTACCGAATTCTGCTTCGG--TATGATAG-GAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | || | | | | ||| |||||||| ||||||| | |||| Sbjct 1390382 CTT---GAAACATACTACAGCCTYAGGTAGCGAAGAGCCAACATCGAGGTGCCAAACCTT 1390326 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | ||| ||||||||| ||||||||| Sbjct 1390325 CCCGTCGATGTGAACTCTTGGGGAAGATCAGCYTGTTATCCCTAGAGTAACTTTT 1390271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854369215968