Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3046 244 2e-62 seq3603 226 6e-57 seq36 208 2e-51 seq216 205 2e-50 seq38 194 4e-47 seq126 163 6e-38 seq263 78.8 2e-12 seq87 78.8 2e-12 >seq3046 Length=1400 Score = 244 bits (270), Expect = 2e-62 Identities = 181/209 (87%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | ||||| ||||| | | | ||| |||| ||| ||| ||||||||||||||| Sbjct 1232 TTTACGACCCGAAAGCCTTCATCC-CTCACACGGCGTTG-CTGCGTCAGGCTTTCGCCCA 1175 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1174 TTGCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTTTCAGTTCCAGT 1115 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| || Sbjct 1114 GTGACTGATCATCCTCTCAGACCAGTTACTCATCGTTGCCTTGGTAGGCCATTACCCTAC 1055 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCT 210 |||||||||||| ||| ||||||||| Sbjct 1054 CAACTAGCTAATGAGACGCGGGCTCATCT 1026 >seq3603 Length=163330 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 109049 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 108991 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 108990 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 108931 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 108930 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 108871 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 108870 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 108825 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 108824 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 108767 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 108766 GTCCGCCACT 108757 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 146192 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 146250 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 146251 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 146310 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 146311 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 146370 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 146371 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 146416 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 146417 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 146474 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 146475 GTCCGCCACT 146484 >seq36 Length=5049855 Score = 208 bits (230), Expect = 2e-51 Identities = 148/169 (88%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 3188901 CACGCGGCATTG-CTCTGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 3188959 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 3188960 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 3189019 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || |||| ||||||| || ||| ||| ||||||||| ||||||||| || Sbjct 3189020 ACTGATCATCGCCTTRGTAAGCTATTGCCTCACCAATTAGCTAATCAGA 3189068 >seq216 Length=876303 Score = 205 bits (226), Expect = 2e-50 Identities = 236/310 (76%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||| |||||||||||||| || |||||||||||||||||| Sbjct 635640 CACGCGGCATTG-CTCCGTCAAGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTC 635582 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||| | Sbjct 635581 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTTGGACCAGCT 635522 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| || ||| ||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 635521 ACTGATCATCACCTCGGTAAGCTATTGCCTCACCAACTAGCTAATCGGACGCGAGCCCCT 635462 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || | ||| |||| | | | | || | |||||||| Sbjct 635461 CCT-----CG---GGC----AGAT-TCCTCCTTTTGCTCCT-CARCCTACGGGGTATTAG 635416 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 635415 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 635358 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 635357 GTCCGCCACT 635348 >seq38 Length=4897333 Score = 194 bits (214), Expect = 4e-47 Identities = 133/149 (89%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 46 ATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105 ||| ||||| ||||||||| || |||||||||||||||||||||||||||||||| || Sbjct 4259276 ATCTGGCTT-CGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 4259218 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 |||||||||| |||||||| |||||||||||||| |||||| ||| |||| ||||||||| Sbjct 4259217 GTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGG 4259158 Query 166 TGAGCCATTACCTCACCAACTAGCTAATC 194 | ||| ||| ||||||||||||||||||| Sbjct 4259157 TAAGCTATTGCCTCACCAACTAGCTAATC 4259129 >seq126 Length=1828961 Score = 163 bits (180), Expect = 6e-38 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 52 CTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCT 111 || ||||||||||||||| |||||||| ||||||| ||||| |||||| || |||||||| Sbjct 1012947 CTCTCGCCCATTGTCCAAGATTCCCCATTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCT 1012888 Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC 171 |||| |||||||| |||||||||| ||||||| || | ||| | | |||||| |||| Sbjct 1012887 CAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCC 1012828 Query 172 ATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216 |||||| |||||||| ||||| | || | ||||||| ||||| Sbjct 1012827 TTTACCTGACCAACTACCTAATACTACACAAGCTCATCAAATAGC 1012783 >seq263 Length=594644 Score = 78.8 bits (86), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 4/81 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 233213 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 233270 Query 59 CCATTGTCCAATATTCCCCAC 79 ||||||||||| ||||||||| Sbjct 233271 CCATTGTCCAAGATTCCCCAC 233291 >seq87 Length=2544503 Score = 78.8 bits (86), Expect = 2e-12 Identities = 87/117 (74%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| | ||| |||||||| || |||||| | |||| ||||||| |||| | Sbjct 1361649 TCATGTTTTTGCCCATTGCAAAAAATTCCC-------GTCTCCTGTAGGAGACTGGGTCT 1361701 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTT 163 ||||||||||||||||||||||| ||| || |||||| ||| |||| || |||| Sbjct 1361702 TGTCTCAGTTCCAGTGTGACTGAGCATATTCGTGGACCAGCTACTGATCATCCCCTT 1361758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071961375840