Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2900 437 3e-120 seq3603 264 4e-68 seq217 141 3e-31 seq243 123 9e-26 seq11 116 1e-23 seq96 89.7 2e-15 >seq2900 Length=1624 Score = 437 bits (484), Expect = 3e-120 Identities = 462/602 (77%), Gaps = 20/602 (3%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||| | |||| || |||||||||| || || | ||| | | ||||||||| Sbjct 619 TCGACTACGAACCTTA-TCACCCGCAGTCTGACTCCCAGGATCTTAACTTACGGCATTCG 677 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCG 120 ||||||| | || ||||||| || ||||||||| || |||||||||||||||| Sbjct 678 GAGTTTGAAAGGGTTTGGTAAGCGGGTAAGCCCCCTAGCCCTGTCAGTGCTCTACCTCCG 737 Query 121 GGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGT 180 | |||| | || ||| |||| ||| ||||||| |||||||||||||||| ||| Sbjct 738 CAAGTAAACTCCTGAGGCTATACCTCAATATATTTCGGAGAGAACCAGCTATCACCGAGT 797 Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||||||||||||||||||||||||||| ||||||| | |||||||| || |||| Sbjct 798 TTGATTGGCCTTTCACCCCTATCCACAAGTCATCCGAGTAATTTTCAACTTACAACGGTT 857 Query 241 CGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300 ||||||||||| ||| |||||| |||||||||||| |||||||||||||| ||||| Sbjct 858 CGGTCCTCCACTTGGTTTTACCCAAGCTTCAACCTGCTCATGGATAGATCACCCGGCTTC 917 Query 301 GGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA 360 |||||| || ||| | ||||| || |||||||||||||||||||||| || Sbjct 918 GGGTCTAATCCGCAGTACT-AGTCGCCCATTTAAGACTCGCTTTCGCTACGGCTACACCT 976 Query 361 CA-CGGGTTAACCTCGCGACACAACGCA--AACTCGCAGGCTCATTCTTCAAAAGGCACG 417 || ||| ||||||||| ||| || | ||||||| ||| |||| | ||||||||||| Sbjct 977 CATCGGCTTAACCTCG---CACTACAGATTAACTCGCTGGCCCATTATGCAAAAGGCACG 1033 Query 418 CCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAG 477 | ||||| | || || | ||||| || | ||||||||||| |||||||| Sbjct 1034 CGGTCAC-----ATCTCAAGG------ATGCTCCCACTGCTTGTAGGCACACGGTTTCAG 1082 Query 478 GTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGC 536 || ||||| |||||||| ||||||| ||||||||||||||||||||||||| || | | Sbjct 1083 GTTCTATTGCACTCCCCTAACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTACAC 1142 Query 537 TATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATT 596 |||||||| |||| ||||||||| ||| | |||||| ||||||||| ||| ||| Sbjct 1143 TATCGGTCGTCAAGTAGTATTTAGCCTTGGAAGATGGTCCTCCCAGATTCAAACGGGATT 1202 Query 597 TC 598 || Sbjct 1203 TC 1204 >seq3603 Length=163330 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 113233 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 113174 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 113173 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 113114 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 113113 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 113054 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 113053 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 113001 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 113000 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 112946 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 112945 CCCT---GGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 112894 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 112893 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 112834 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 112833 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 112784 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 142008 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 142067 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 142068 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 142127 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 142128 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 142187 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 142188 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 142240 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 142241 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 142295 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 142296 CCCT---GGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 142347 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 142348 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 142407 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 142408 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 142457 >seq217 Length=876757 Score = 141 bits (156), Expect = 3e-31 Identities = 164/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||| | ||| || |||||||||||||||||||||| | | ||| | || | |||||| Sbjct 460693 GCTDCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCRAGTGRCATTTCAC 460752 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| |||| || ||||| | || Sbjct 460753 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTTGGACCTCCGCTTAGT 460812 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 460813 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 460872 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| |||||||||||||||||||| Sbjct 460873 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT 460908 >seq243 Length=731206 Score = 123 bits (136), Expect = 9e-26 Identities = 313/470 (67%), Gaps = 34/470 (7%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||| ||||| || |||||| ||| || | ||||| | | ||| | |||| |||||| Sbjct 177178 GCTACACCTCAACGCATTTGAGGGGGAGCTAGCTAGCTCTGGGTTCAAGTGGCATTTCAC 177237 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 |||| ||||| |||| | | | |||| | | ||| | || | |||||| Sbjct 177238 TCCTAACCACAATTCATTTGTTAATTCTTCAGCATCAGTCGATTTAGATCTCCAC----- 177292 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTG 314 | ||| |||||| ||| ||| ||||||| || | | |||||||| | | | ||| Sbjct 177293 --TTCCCAAGCTTCATCCTAGTCATAGATAGATTACCTGGGTTCGGGTCCATAAGCAGTG 177350 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAA 370 || | ||||||| |||||||||||||||||||| || || | ||| Sbjct 177351 ACAATT----GCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 177403 Query 371 CCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| || | | |||| |||||||||||||| | |||||| || | | Sbjct 177404 CCAAGC--CACTACCTATGAATCGCTGGCTCATTCTTCAACAAGCACGCAGTTA----GA 177457 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | ||| | |||| || || || ||||||| | ||||||||| Sbjct 177458 GCC--ATGGGCTC-----CTCCCACTACTTAGGAGCTTATGGTTTTGTATTCTATTTCAC 177510 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| |||||||||||||| | |||| | |||||| | | ||||| ||||| | Sbjct 177511 TCCCCGATGAGGGTACTTTTCACCCTCCCCTTATGGTACTACTTCACTATCAGTCACATA 177570 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||| | ||| || Sbjct 177571 GGAGTATTTAGCCTTGTAAGGTGGTCCTTGCTGATTCACAYGGGATTCCA 177620 >seq11 Length=9900813 Score = 116 bits (128), Expect = 1e-23 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 6277940 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 6277999 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 6278000 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 6278059 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||| | ||| | || || |||| ||| ||||||| | | ||| Sbjct 6278060 CACAAGTCATCCTGGTATTTTGCCACATACGTGGATTCAATCCTCCAAGGCTTGTTAGAG 6278119 Query 263 CGCGCTTCAACCTGCCCATGGATAGATC 290 | | | ||||||||||||||| |||||| Sbjct 6278120 CTCTCCTCAACCTGCCCATGGCTAGATC 6278147 >seq96 Length=2395790 Score = 89.7 bits (98), Expect = 2e-15 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 1194842 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 1194901 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| || |||||||||| | | ||| ||||||||||||||||| | Sbjct 1194902 TGAAATAGATTTCGCAGAAAACCAGCTATATCTGATCTTGGTTGGCCTTTCACCCCTAGC 1194961 Query 204 CACAGGTCATCCCC 217 |||| ||||||||| Sbjct 1194962 CACAAGTCATCCCC 1194975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817534511872