Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2900 318 1e-84 seq3603 223 9e-56 seq243 111 4e-22 seq217 78.8 2e-12 seq327 75.2 3e-11 >seq2900 Length=1624 Score = 318 bits (352), Expect = 1e-84 Identities = 332/419 (79%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| | ||| |||||||| ||||||||||||||| || | Sbjct 815 CCTATCCACAAGTCATCCGAGTAA--TTTTCAACTTACAACGGTTCGGTCCTCCACTTGG 872 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||||| ||| |||||||| ||| ||||||||| ||||| || |||||||| | | Sbjct 873 TT-TTACCCAAGCTT-CAACCTGCTCAT-GGATAGATCACCCGGCTT-CGGGTCTAATCC 928 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAA 182 ||| ||||| ||||| ||||||||||||| ||||||| || | ||| |||| | | Sbjct 929 GCAGT-ACTAGTCGCCCATTTAAGACTCGCTTT-CGCTACGGCTACACCTCATCGGCTTA 986 Query 183 GCTTTGCCACTGAAAAT-AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | || ||| | || || |||||| |||||||| ||||||| |||| ||||| | Sbjct 987 ACCTCGC-ACTACAGATTAACTCGCTGGCCCATTATGCAAAAGGCACGCGGTCACATCTC 1045 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 || | | ||||||||||||||| ||| ||||||||||| |||||| ||||||||| | Sbjct 1046 AAGGATG-CTCCCACTGCTTGTAGGCACACGGTTTCAGGTTCTATTGCACTCCCCTAACA 1104 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC-AGTAGTATT 360 |||||||||||| |||||||||||||||||| || ||||||||||| ||| ||||||||| Sbjct 1105 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTACACTATCGGTC-GTCAAGTAGTATT 1163 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||| |||||||| |||| ||||| || |||| |||| ||| ||||||| Sbjct 1164 TAGCCTTGGAAGATGGTCCTCCCAGATTCAAACGGGATTTCGCGTGTCCCGCCCTACTC 1222 >seq3603 Length=163330 Score = 223 bits (246), Expect = 9e-56 Identities = 311/420 (74%), Gaps = 26/420 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 113167 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 113111 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 113110 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 113055 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 113054 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 112997 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| |||| |||| ||| Sbjct 112996 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 112943 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| ||||||||| || |||||||||| | ||||||||||||||| | Sbjct 112942 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 112885 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||| Sbjct 112884 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 112826 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 112825 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 112766 Score = 223 bits (246), Expect = 9e-56 Identities = 311/420 (74%), Gaps = 26/420 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 142074 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 142130 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 142131 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 142186 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 142187 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 142244 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| |||| |||| ||| Sbjct 142245 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 142298 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| ||||||||| || |||||||||| | ||||||||||||||| | Sbjct 142299 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 142356 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||| Sbjct 142357 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 142415 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 142416 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 142475 >seq243 Length=731206 Score = 111 bits (122), Expect = 4e-22 Identities = 222/315 (70%), Gaps = 17/315 (5%) Strand=Plus/Plus Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||| ||| || ||| ||||| |||||| || || || |||||| || | || | Sbjct 177295 CCCAAGCTT-CATCCTAGTCATAG-ATAGATTACCTGGGTT-CGGGTCCATAAGC-AGTG 177350 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTT 187 || | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 177351 ACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA- 177407 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 |||||| || | |||||| | |||| | ||| | | ||||||| | | | | || Sbjct 177408 GCCACTACCTATGAATCGCTGGCTCATTCTTCAACAAGCACGCAGTTAG--AGCCA--TG 177463 Query 248 GGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||| ||| || || ||||| ||||||||||||||| | ||| Sbjct 177464 GGCTCCTCCCACTACTTAGGAGCTTATGGTTTTGTATTCTATTTCACTCCCCGATGAGGG 177523 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 | |||||| || | |||| | ||||||| ||||||||| |||| || |||||||||| Sbjct 177524 -TACTTTTCACCCTCCCCTTATGGTACTACTTCACTATCAGTCACATAGGAGTATTTAGC 177582 Query 365 CTTGGAGGATGGTCC 379 |||| | | |||||| Sbjct 177583 CTTGTAAGGTGGTCC 177597 >seq217 Length=876757 Score = 78.8 bits (86), Expect = 2e-12 Identities = 121/161 (75%), Gaps = 9/161 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| |||||||| || ||||| ||||| | Sbjct 460759 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTTGGACCTCCGCTTAGTT-TC 460815 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 460816 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 460871 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 ||| | |||||| ||||||||| |||||||||| |||| Sbjct 460872 GACAATT-GCCCTATGAAGACTCGC-TTTCGCTACGGCTCC 460910 >seq327 Length=402351 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||| |||||| |||||||||||||| ||| |||||||||| Sbjct 253540 GTCCTTTTCATCTTTCCCTCGTGGTACTTGTTCACTATCGGTCTCTCACCAGTATTTAGC 253481 Query 365 CTTGGA 370 |||||| Sbjct 253480 CTTGGA 253475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241555265152