Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3603 219 8e-55 seq36 201 2e-49 seq216 199 8e-49 seq3046 178 3e-42 seq38 165 2e-38 seq126 120 6e-25 >seq3603 Length=163330 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 109044 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 108985 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 108984 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 108925 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 108924 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 108865 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 108864 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 108821 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 108820 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 108762 Query 300 CCACT 304 ||||| Sbjct 108761 CCACT 108757 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 146197 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 146256 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 146257 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 146316 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 146317 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 146376 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 146377 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 146420 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 146421 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 146479 Query 300 CCACT 304 ||||| Sbjct 146480 CCACT 146484 >seq36 Length=5049855 Score = 201 bits (222), Expect = 2e-49 Identities = 221/292 (76%), Gaps = 16/292 (5%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||||||||||||||||||||||||||||| Sbjct 3188918 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 3188977 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| ||| || Sbjct 3188978 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTRGT 3189037 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 |||||| |||||||| || |||||| | |||||||| || | ||| | |||| Sbjct 3189038 AAGCTATTGCCTCACCAATTAGCTAATCAGATGCGAGCCCCTCCTCGGGCG--GATTCTT 3189095 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 || ||| ||||| | | || | ||||||||| |||||||| | Sbjct 3189096 CCTTC---------TGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTAT 3189142 Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | |||| ||| || |||||||| || | | ||||||||||||||||||||| Sbjct 3189143 TGTTCCCCTCCCAAGGGCAGGTT-CTTATGCGTTACTCACCCGTCCGCCACT 3189193 >seq216 Length=876303 Score = 199 bits (220), Expect = 8e-49 Identities = 228/305 (75%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||| || || ||||||||||||||||||||| Sbjct 635635 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAG 635576 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| ||||| | || ||||| ||| Sbjct 635575 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTTGGACCAGCTACTGAT 635516 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | || || ||| |||||| ||||||||||| |||||||| ||||||||| || | Sbjct 635515 CATCACCTCGGTAAGCTATTGCCTCACCAACTAGCTAATCGGACGCGAGCCCCTCCTCGG 635456 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | || | ||||||||| Sbjct 635455 GCAGATTCCTCCTT------------TTGC--TCCTCARCC--TACGGGGTATTAGCAGC 635412 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 635411 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 635353 Query 300 CCACT 304 ||||| Sbjct 635352 CCACT 635348 >seq3046 Length=1400 Score = 178 bits (196), Expect = 3e-42 Identities = 146/178 (82%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||| ||||| |||| ||||||| ||||||| ||||||||||||||||||||| Sbjct 1201 GGCGTTGCTGCGTCAGGCTTTCGCCCATTGCGCAATATTCCCCACTGCTGCCTCCCGTAG 1142 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||| ||||| ||| |||| | | ||| |||||||| || | ||| || Sbjct 1141 GAGTCTGGACCGTGTTTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACTCAT 1082 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 ||| | |||||| ||| |||| | |||||||| ||||| | |||| || ||||||| Sbjct 1081 CGTTGCCTTGGTAGGCCATTACCCTACCAACTAGCTAATGAGACGCGGGCTCATCTTT 1024 >seq38 Length=4897333 Score = 165 bits (182), Expect = 2e-38 Identities = 123/144 (85%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 17 GGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTC 76 || ||| ||||||| | || || ||||||||||||||||||||||||||||||||||||| Sbjct 4259272 GGCTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTC 4259213 Query 77 TCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGC 136 ||||||||| |||||| | ||| |||||| | || ||||| |||| ||| |||||| || Sbjct 4259212 TCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGC 4259153 Query 137 TATTATCTCACCAACTACCTAATC 160 |||| ||||||||||| |||||| Sbjct 4259152 TATTGCCTCACCAACTAGCTAATC 4259129 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 4259059 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 4259001 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 4259000 CTCACCCGTCCGCCACT 4258984 >seq126 Length=1828961 Score = 120 bits (132), Expect = 6e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 21 TCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 80 || |||||||| ||| || ||||| ||||||| ||||| |||||| |||||||||||||| Sbjct 1012944 TCGCCCATTGTCCAAGATTCCCCATTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 1012885 Query 81 TCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATT 140 ||||| |||||| | ||| || || || |||| ||| | |||||||| || || Sbjct 1012884 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 1012825 Query 141 ATCTCACCAACTACCTAAT 159 | || |||||||||||||| Sbjct 1012824 ACCTGACCAACTACCTAAT 1012806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998364027648