Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2418 75.2 1e-11 seq93 75.2 1e-11 seq39 73.4 5e-11 >seq2418 Length=4647 Score = 75.2 bits (82), Expect = 1e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | ||||| | |||| |||||||||||||| | | ||||| Sbjct 4197 CCAACATAATAGG-ACCAAAATCCTAGGATGTTATCCCATGCTAATGTATACAGAGCGTA 4139 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||| ||||||||||| |||| |||| Sbjct 4138 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 4104 >seq93 Length=2437659 Score = 75.2 bits (82), Expect = 1e-11 Identities = 67/83 (81%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| | |||| |||||||||||||| | | ||||| || |||||||| |||||||| Sbjct 1536195 TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAA 1536136 Query 93 TTTTCTCAAGGTAAAAGTCCTGG 115 ||| |||| |||| || |||| Sbjct 1536135 TTTCTTCAAAGTAACAGCACTGG 1536113 >seq39 Length=4819851 Score = 73.4 bits (80), Expect = 5e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| | |||| |||||||||||||| | | ||||| || |||||||| |||||||| Sbjct 1233071 TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAA 1233012 Query 93 TTTTCTCAAGGTAAAAG 109 ||| |||| |||| || Sbjct 1233011 TTTCTTCAAAGTAACAG 1232995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595179225102