Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2900 241 3e-61 seq3603 223 8e-56 seq111 170 5e-40 seq84 134 3e-29 seq97 114 3e-23 seq19 98.7 2e-18 seq372 77.0 8e-12 >seq2900 Length=1624 Score = 241 bits (266), Expect = 3e-61 Identities = 301/404 (75%), Gaps = 9/404 (2%) Strand=Plus/Plus Query 3 ACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCT 62 ||||||| | || ||||||||||||| |||||| |||| ||| ||| ||||| |||| Sbjct 221 ACTACGCTTTTCAGCCTCGCCTTAGGGGCCGACTAACCCTGGGAAGATTAACTTTACCCA 280 Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 |||| |||||| | ||||| || || || |||| || || |||||||||| || Sbjct 281 GGAAACCTTGGGTTTACGGCGAACAGGTTTTTCACCTGTTTTTTCGTTACTCATGCCAGC 340 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA- 179 || ||||| | || || |||| || || || | | ||||| | | | || Sbjct 341 ATATTCACTTCCCAACAG-TCCAGCAGACTTTC-CAATCTACCTTCATCCCGGTTGGGAA 398 Query 180 CGCTCCCCTACCCAACC---ACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 ||||| |||||| | | | || | | || ||||||||| ||||| |||||| Sbjct 399 CGCTCTCCTACCAATCAGGTAAACCTGATTCCGAAGCTTCGGCACCATACTTA-GCCCCG 457 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 |||||| ||||||| | || || ||||||||||||||||||| ||||| |||| ||| Sbjct 458 TTACATTTTCGGCGCAAAGTCGCTAGACCAGTGAGCTATTACGCTTTCTTTAAAGGGTGG 517 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| ||||||||||||||| |||||| || ||| ||| |||||||||||| ||| Sbjct 518 CTGCTTCTAAGCCAACCTCCTGGCTGTCTAAGCGACTTCACCTCCTTTCCCACTTAGTAT 577 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||||||||||||||| | |||||||| ||||||||||| Sbjct 578 GGATTTAGGGGCCTTAGCTGTCGGTCTGGGCTCTTTCCCTCTCG 621 >seq3603 Length=163330 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 113783 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 113724 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 113723 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 113664 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | ||| ||||| || || | | Sbjct 113663 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGC 113608 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 113607 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 113552 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 113551 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 113493 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 113492 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 113433 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 113432 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 113384 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 141458 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 141517 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 141518 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 141577 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | ||| ||||| || || | | Sbjct 141578 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGC 141633 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 141634 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 141689 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 141690 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 141748 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 141749 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 141808 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 141809 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 141857 >seq111 Length=2052833 Score = 170 bits (188), Expect = 5e-40 Identities = 251/347 (72%), Gaps = 18/347 (5%) Strand=Plus/Plus Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| | Sbjct 2037923 GGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAWGCCGAC 2037982 Query 122 ATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG- 178 |||||| || ||| || ||||| || || | ||| ||||| || || | || Sbjct 2037983 ATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGCGG 2038038 Query 179 -ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 || |||||||||| | || ||| | ||||||||||||| ||| |||| ||| Sbjct 2038039 AACDCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCDCTTA-GCC 2038094 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | ||||| ||||||||||||| || ||||||||||| Sbjct 2038095 CCGTT-CATCTTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTATGCTCTCTTTCAAGGG 2038153 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| | | |||||| ||| ||||| ||| | || |||||| ||||||| Sbjct 2038154 TGGCTGCTTCTAGGAAAACCTCATGGCTGTCTCTGCACCCTTACCTCCTTTATCACTGAG 2038213 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| | ||||||||||||||| Sbjct 2038214 CGKTCATTTAGGGGCCTTAGCTGGTGATCCGAGCTGTTTCCCTCTCG 2038260 >seq84 Length=2707321 Score = 134 bits (148), Expect = 3e-29 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || |||||||||| |||||||| |||| ||||||| || |||||||||| |||||||| Sbjct 610911 CTAGACCAGTGAGYTATTACGCTTTCTTCAAAGGATGACTACTTCCAAGCCCACCTCCTG 610970 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||||| ||| ||| |||||| ||||| ||| | ||||||| ||||||| | Sbjct 610971 GTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTAC 611030 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||||||||||| ||||||| Sbjct 611031 GATCTGGGCTGTTTYCCTCTCG 611052 >seq97 Length=2389559 Score = 114 bits (126), Expect = 3e-23 Identities = 232/334 (69%), Gaps = 19/334 (6%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| ||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1389220 CGACTACACCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTTCGTGGACGAACCTTGCG 1389161 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | | | | |||||| |||| | | |||||| ||| Sbjct 1389160 GAGGAATCCTTAGGTTTTTAAGGCATTGGATTCTCACCAATGTTTGCATTACTCAAGCCG 1389101 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | ||| ||||| || || | | Sbjct 1389100 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGC 1389045 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| Sbjct 1389044 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATTGCTTAG- 1388989 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 |||| | ||| |||| || | | || || ||||||||||||||||||||||||||| Sbjct 1388988 -CCCGTT-CATCTTCGGTGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1388931 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 | |||||||||| | || |||||||||| ||||| Sbjct 1388930 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 1388897 >seq19 Length=7695933 Score = 98.7 bits (108), Expect = 2e-18 Identities = 149/203 (73%), Gaps = 17/203 (8%) Strand=Plus/Plus Query 109 TACTCATGCCTGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTC 166 |||||| ||| ||||||| || ||| || ||||| || || | ||| ||||| Sbjct 7670274 TACTCAAGCCGACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC 7670330 Query 167 ACCACTGACACG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCG 220 || || | || ||||||||||||| | || ||| | ||||||||||||| Sbjct 7670331 -CCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCA 7670386 Query 221 GATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGC 280 ||| |||| |||||| | ||| ||||||| | | || || |||||||||||||||| Sbjct 7670387 GATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGC 7670444 Query 281 ACTCTTTCAAGGATGGCTGCTTC 303 |||||||||||| |||||||||| Sbjct 7670445 ACTCTTTCAAGGGTGGCTGCTTC 7670467 >seq372 Length=239581 Score = 77.0 bits (84), Expect = 8e-12 Identities = 98/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||||| |||| | |||||| ||||| |||| | || ||||||| | | || Sbjct 88265 CAGTGAGCTATTACACACTGTATCAAGGGTGGCTACTTCTAGGCAAACCTCCAGAGTTTC 88324 Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 | || || || |||| ||||||| | |||||| |||||||| ||||| Sbjct 88325 TCTACACCTTTACCCTCTTTATCACTGAGCAATTCTTTAGGGTCCTTAGCTAGTGATCCT 88384 Query 385 GGCTGTTTCCCTCTC 399 || |||| |||| || Sbjct 88385 GGTTGTTCCCCTTTC 88399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177557571072