Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq3603 118 9e-25 seq79 102 7e-20 seq46 98.7 8e-19 seq170 82.4 6e-14 >seq3603 Length=163330 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 109943 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 109884 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| ||| |||| ||| Sbjct 109883 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATGAGGGGCAT 109824 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 109823 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 109784 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 145298 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 145357 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| ||| |||| ||| Sbjct 145358 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATGAGGGGCAT 145417 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 145418 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 145457 >seq79 Length=2879232 Score = 102 bits (112), Expect = 7e-20 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||||||||| | || |||| ||| |||||||| ||| Sbjct 494499 TTTTTGGAGTTAGCTCACCCTCGCGGGATCACGACCCTTTGTCCCAGCCATTGTAGCACG 494440 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| ||| |||| ||||| ||||||||||||||| ||||||||||||| | Sbjct 494439 TGTGTCGCCCAGGGCATGAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCT 494380 Query 156 TGTCAC 161 | |||| Sbjct 494379 TATCAC 494374 >seq46 Length=4379519 Score = 98.7 bits (108), Expect = 8e-19 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||||||| ||||||| |||| ||||||||||||||| ||||||||||| Sbjct 1054414 TGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGT 1054355 Query 135 CATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||| || | |||| Sbjct 1054354 CATCCCCACCTTCCTCCAGTATATCAC 1054328 >seq170 Length=1268841 Score = 82.4 bits (90), Expect = 6e-14 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 37 TTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGT 96 || ||| ||||||| || | ||||| | || |||| ||| | |||||||| |||| Sbjct 1199330 TTTTGGAGTTAGCTCACCGTTGCGGGATCGCAACCCTTTGTCTCGGCCATTGTAGCACGT 1199389 Query 97 GTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 ||| |||| ||| |||| ||||| |||||| ||||||| ||||||||||| | || Sbjct 1199390 GTGTCGCCCAGGGCATGAGGGGCATGATTACTTGAGGTCATCCTCACCTTCCTCCAGCTT 1199449 Query 157 GTCAC 161 |||| Sbjct 1199450 ATCAC 1199454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415985479910