Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3603 172 9e-41 seq2712 147 4e-33 seq79 145 1e-32 seq1 141 2e-31 seq45 131 3e-28 seq2584 125 1e-26 seq3046 102 1e-19 >seq3603 Length=163330 Score = 172 bits (190), Expect = 9e-41 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 109390 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 109331 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 109330 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 109271 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 109270 CTTAGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 109211 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 109210 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 109151 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 109150 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 109106 Score = 172 bits (190), Expect = 9e-41 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 145851 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 145910 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 145911 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 145970 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 145971 CTTAGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 146030 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 146031 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 146090 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 146091 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 146135 >seq2712 Length=1975 Score = 147 bits (162), Expect = 4e-33 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 47 TTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGAT 106 ||| || |||||||| | | || |||||||||||||||||| ||| | |||||| Sbjct 1688 TTCACCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCDGAAATTCCCTC 1747 Query 107 TGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT 166 |||| || | | |||| || | |||||| | || | ||||||||||| | Sbjct 1748 TGCCCCTACCGTACTCCAGCTTAGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGA 1807 Query 167 TTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAAC 226 ||| || | |||||| || |||||| | |||||| |||||| | |||||||||| Sbjct 1808 TTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAAC 1867 Query 227 GCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 |||||| ||| |||||||||| |||||| |||| ||||||||| ||||||||| || Sbjct 1868 GCTTGCATCCTCTGTATTACCGCKGCTGCTKGCACAGAGTTAGCCGATGCTTATTCCCCA 1927 Query 287 GGTA 290 | || Sbjct 1928 GATA 1931 >seq79 Length=2879232 Score = 145 bits (160), Expect = 1e-32 Identities = 203/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||| | || ||||||| |||||||| | Sbjct 495994 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGTAGAGTGCTTTCGCCATTGGTGTTCTTT 495935 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||| | ||||| || | | |||| || Sbjct 495934 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTTCCTTTGCCCCTACCGTACTCCAG 495875 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 495874 CTTAGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 495815 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || | |||| | ||||| | |||| | |||| ||||||||||| ||| |||||| Sbjct 495814 AGCCACTTACAAACGCTTTATGCTCAATCATTCCGAATAACGCTTGCATCCTCTGTATTA 495755 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| || |||||| ||||||||| ||||||||| ||| || Sbjct 495754 CCGCGGTTGTTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 495710 >seq1 Length=14325340 Score = 141 bits (156), Expect = 2e-31 Identities = 202/282 (72%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || ||||||| |||||||| | Sbjct 1321713 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCTTT 1321772 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || |||||||||||||||||| ||| | |||||| ||||||| | | | | || Sbjct 1321773 TCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCTCTACCGTATTATAG 1321832 Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | ||||| || | | | | |||||| ||| | ||| || | |||||| Sbjct 1321833 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGTGCCTTGGGATTTGACGGCAGACTTGAA 1321891 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | | |||||||||||||| ||| ||||| Sbjct 1321892 AAGCCACCTACAGACACTTTACGCCCAATCATTTCGGATAACGCTTGCATCCTCTGTATT 1321951 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 |||||||||||| |||| ||||||||| ||||||||| || Sbjct 1321952 ACCGCGGCTGCTTGCACAAAGTTAGCCGATGCTTATTCCCCA 1321993 >seq45 Length=4419648 Score = 131 bits (144), Expect = 3e-28 Identities = 166/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 64 TCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCA 123 |||| || ||||| |||||||||||| || | |||||| |||| || | | |||| Sbjct 2968356 TCCG-ATCTCTACACATTTCACCGCTCCATCGGAAATTCCCTCTGCCCCTACCGTACTCC 2968414 Query 124 AGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183 || | |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 2968415 AGCTTAGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGA 2968474 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||| Sbjct 2968475 AAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTAT 2968534 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||| ||||||| ||||||||| ||||||||| ||| || Sbjct 2968535 TACCGCGGCTACTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 2968581 >seq2584 Length=2473 Score = 125 bits (138), Expect = 1e-26 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | |||||| || |||||| |||||||| | | || |||| Sbjct 1803 CTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCDTTGGTGTTCTTTCCGATCTCTA 1744 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||||||| ||| | |||||| |||| || | | |||| || | |||| Sbjct 1743 CGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTAGTAGTT 1684 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | ||||||||||| | ||| || | |||||| || ||||| Sbjct 1683 TCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTAC 1624 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | |||||| |||||| | |||||||||| ||||| ||| |||||||||||||||| Sbjct 1623 RGACGCTTTACGCCCAATCATTCCGGATAACACTTGCATCCTCTGTATTACCGCGGCTGC 1564 >seq3046 Length=1400 Score = 102 bits (112), Expect = 1e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 190 GCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGC 249 |||||| || |||||| |||| ||| |||| ||||||||||| ||| ||||||||||| Sbjct 1387 GCCTACGTGCGCTTTACGCCCAGTAATTCCGAATAACGCTTGCACCCTCCGTATTACCGC 1328 Query 250 GGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||| ||||||||| |||| Sbjct 1327 GGCTGCTGGCACGGAGTTAGCCGGTGCTT 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828771071513