Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1387 120 3e-25 seq2418 113 5e-23 seq327 111 2e-22 seq20 111 2e-22 seq4 89.7 5e-16 >seq1387 Length=10348 Score = 120 bits (132), Expect = 3e-25 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 338 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTYTGTATACATTAGCAT 397 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 398 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGT-GTAATGA 455 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | | | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 456 TTACCAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 515 Query 190 T 190 | Sbjct 516 T 516 >seq2418 Length=4647 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 4104 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 4163 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||| | ||| ||||| ||| || ||| || |||||||| | Sbjct 4164 ATAACATCCTAGGATTTT-GGTCCTATTATGTTGGCCATCGGGATCGGA-GTAATGATTA 4221 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | |||||||| || | | ||||| || |||| ||||||||||||||||||||| Sbjct 4222 ACAGGGATAGTCAGGAGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 4279 >seq327 Length=402351 Score = 111 bits (122), Expect = 2e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||||| | ||||| || ||| Sbjct 97635 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGTATACAATAGCAT 97694 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | ||| |||| || || | ||| | ||||||| Sbjct 97695 GGGATAACATCATAGGATTT-HGGTCTTATTACGTTGGCCTTCGGGATTGGA-GTAATGA 97752 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || || | |||||||||||||||||||| Sbjct 97753 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTA 97812 Query 190 T 190 | Sbjct 97813 T 97813 Score = 109 bits (120), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAAT-ACATTACCAT 69 || |||||||||| ||||||| | ||||| || |||| |||| | | |||||| ||| Sbjct 192761 CTGTTACTTTGAAGAAATTAGCATGCTCAAATCAAGCCTACGCTCTATTTACATTAGCAT 192820 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||| | |||||| | ||| ||||| ||| || | ||| | | ||||||| Sbjct 192821 GGAATAACATCATAGGATTTT-GGTCCTATTATGTTGGCCTTCGGGATCACA-GTAATGA 192878 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| |||||| || | |||| || |||| |||||||||||||||||||| Sbjct 192879 TTAATAGGGACAGTCGGAGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 192938 Query 190 T 190 | Sbjct 192939 T 192939 >seq20 Length=7206814 Score = 111 bits (122), Expect = 2e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 1671580 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGGATACATTAGCAT 1671521 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | ||| ||||| || | | | ||| | ||||||| Sbjct 1671520 GGGATAACATCATAGGATTTT-GGTCCTATTACGTTGACCTTTGGGATCAGA-GTAATGA 1671463 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | | | ||||||| ||||| | ||||| || |||| |||||||||||||||||||| Sbjct 1671462 TCGACAAGGATAGTTGGGGGCATTCGTATTTCATAGTCARAGGTGAAATTCTTGGATTTA 1671403 Query 190 T 190 | Sbjct 1671402 T 1671402 >seq4 Length=11052854 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCATGGA 72 |||||||||||||||||||| | |||||||| | || ||| | | |||||| ||||| Sbjct 10307350 TTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGTCTACACTCTAGAAACATTAGCATGGG 10307291 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | ||| ||||| | || | ||||| |||||||| | Sbjct 10307290 ATAACATCATAGGA-TTTTGGTCCTATTACGGTGGCCTTTAGGA-TTAAAGTAATGATTA 10307233 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | ||| | | ||||| || || || || ||||||||| ||||| |||||||||| Sbjct 10307232 GCAAGGACAATTGGGGGAGTTCGTGTTTCATAGTCAAAGGTAAAATTATTGGATTTAT 10307175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511982129120