Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3603 266 8e-69 seq3046 255 1e-65 seq216 214 4e-53 seq36 203 8e-50 seq38 179 9e-43 seq126 132 1e-28 >seq3603 Length=163330 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 109075 TTGACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 109016 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 109015 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 108956 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 108955 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 108896 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 108895 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 108847 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 108846 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 108789 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 108788 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 108743 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 108742 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 108696 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 146166 TTGACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 146225 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 146226 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 146285 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 146286 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 146345 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 146346 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 146394 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 146395 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 146452 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 146453 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 146498 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 146499 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 146545 >seq3046 Length=1400 Score = 255 bits (282), Expect = 1e-65 Identities = 318/430 (74%), Gaps = 33/430 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| ||||||| |||||| || ||| |||| | ||||| |||||||| |||||||| Sbjct 1232 TTTACGACCCGAAAGCCTTCATCCCTCACACGGCGTTGCTGCGTCAGGCTTTCGCCCATT 1173 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1172 GCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTTTCAGTTCCAGTGT 1113 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| ||||||||||||||||| || ||||| |||| ||| ||||||||||| ||| Sbjct 1112 GACTGATCATCCTCTCAGACCAGTTACTCATCGTTGCCTTGGTAGGCCATTACCCTACCA 1053 Query 185 ACTAGCTAATCCCATCTGGGTTCATC------CG-----ATAGTGAGAGGCCCGAAGGTC 233 |||||||||| | ||| ||||| || ||| |||||| | | Sbjct 1052 ACTAGCTAATGAGACGCGGGCTCATCTTTGGACGAATGCATATGCAGAGGC---ATCCTT 996 Query 234 CCCCTCTTTGGTCTT-----GCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTAT 288 || || | || || | ||| |||||||||| | |||| | ||||| Sbjct 995 TACCGACTTATTATTACAAAGCCAGTCTATCCGGTATTAGCTCCACTTTCGCGAAGTTAT 936 Query 289 CCC-CCTCCATCAGGCAG-TTTCCCAGACATTACTCACCCGTCCGCCACTC--GTCAGCG 344 ||| |||| ||| || || |||| | |||||||||||| |||||||| |||| | Sbjct 935 CCCAAATCCA-AAGGTAGATTACCCACGCGTTACTCACCCGTGCGCCACTCTACTCAGGG 877 Query 345 AAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGT 404 | |||| ||| || ||| ||||||||||||||||||| ||||||||||| Sbjct 876 CCG----AAGCCCCTTTCT-----CGTACGACTTGCATGTGTTAGGCACGCCGCCAGCGT 826 Query 405 TCAATCTGAG 414 ||| |||||| Sbjct 825 TCATTCTGAG 816 >seq216 Length=876303 Score = 214 bits (236), Expect = 4e-53 Identities = 248/332 (75%), Gaps = 13/332 (4%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| | |||||| | | |||||||||| ||| | ||| |||| |||||||| Sbjct 635666 TTGACGACCCGTGGKCCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTTTCGCCCATT 635607 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 635606 GCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 635547 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||||| ||||||||| |||| || ||| ||| || ||| || | ||| Sbjct 635546 GGCTGATCATCCTCTTGGACCAGCTACTGATCATCACCTCGGTAAGCTATTGCCTCACCA 635487 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | ||| || | || | |||| Sbjct 635486 ACTAGCTAATCGGACGCGAGCCCCTCC--TCG-----GGC----AGATTCCTCCTTTTGC 635438 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 635437 TCCT-CARC-CTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 635380 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACT 336 | ||| | | |||||||||||||||||||| Sbjct 635379 GGTTCTTACGCGTTACTCACCCGTCCGCCACT 635348 >seq36 Length=5049855 Score = 203 bits (224), Expect = 8e-50 Identities = 233/312 (75%), Gaps = 13/312 (4%) Strand=Plus/Plus Query 25 TTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCT 84 ||| | |||||||||| ||| |||||||| ||||||||| | || ||||||||||||| Sbjct 3188895 TTCCTCCACGCGGCATTGCTCTGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCT 3188954 Query 85 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGAC 144 ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||| Sbjct 3188955 GCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGAC 3189014 Query 145 CAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGG 204 |||||| |||| |||||| || || ||| || | |||| ||||||||| || | | Sbjct 3189015 CAGCTACTGATCATCGCCTTRGTAAGCTATTGCCTCACCAATTAGCTAATCAGATGCGAG 3189074 Query 205 TTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTA 264 | ||| || | || || ||| | || || | | | || | |||| Sbjct 3189075 CCCCTCC--------TCGGGCGGA--TTCTTCCT-TCTGCTCCTCAGCC--TACGGGGTA 3189121 Query 265 TTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCAC 324 ||||| |||||||||| || | ||||||| ||||| ||| | | |||||||| Sbjct 3189122 TTAGCAGCCGTTTCCAGCTATTGTTCCCCTCCCAAGGGCAGGTTCTTATGCGTTACTCAC 3189181 Query 325 CCGTCCGCCACT 336 |||||||||||| Sbjct 3189182 CCGTCCGCCACT 3189193 >seq38 Length=4897333 Score = 179 bits (198), Expect = 9e-43 Identities = 130/149 (87%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 106 ||| ||||| ||||||||| | || |||||||||||||||||||||||||||||||| || Sbjct 4259276 ATCTGGCTT-CGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 4259218 Query 107 GTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGG 166 |||||||||| |||||||||||| |||||||||| ||||||||| |||| |||||| || Sbjct 4259217 GTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGG 4259158 Query 167 TGGGCCATTACCCCGCCAACTAGCTAATC 195 | || ||| || | |||||||||||||| Sbjct 4259157 TAAGCTATTGCCTCACCAACTAGCTAATC 4259129 >seq126 Length=1828961 Score = 132 bits (146), Expect = 1e-28 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 116 |||||||||| ||| |||||||| ||||||| ||||| |||||| || |||||||||||| Sbjct 1012943 CGCCCATTGTCCAAGATTCCCCATTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGT 1012884 Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA 176 |||||||||||| |||||| |||||||||| | ||| | | || ||| ||| ||| Sbjct 1012883 CCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTA 1012824 Query 177 CCCCGCCAACTAGCTAAT 194 || ||||||| ||||| Sbjct 1012823 CCTGACCAACTACCTAAT 1012806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222355956928