Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3046 352 8e-95 seq3603 324 4e-86 seq216 201 3e-49 seq36 196 1e-47 seq38 174 5e-41 seq126 116 1e-23 seq45 116 1e-23 seq2712 113 1e-22 seq1 100 9e-19 seq79 98.7 3e-18 >seq3046 Length=1400 Score = 352 bits (390), Expect = 8e-95 Identities = 297/369 (80%), Gaps = 27/369 (7%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||||| ||||||||||||||| ||||| ||| ||||||||| ||||| |||| | | Sbjct 1033 CCCGCGTCTCATTAGCTAGTTGGTAGGGTAATGGCCTACCAAGGCAACGATGAGTAACTG 1092 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| | |||| ||||||||| |||||||||| ||||||||||||||| Sbjct 1093 GTCTGAGAGGATGATCAGTCACACTGGAACTGAAACACGGTCCAGACTCCTACGGGAGGC 1152 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 |||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||| ||| Sbjct 1153 AGCAGTGGGGAATATTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGTGTGAGGGAT 1212 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------TAA----- 379 |||||| ||||||||||||| ||||||| | |||||| ||| Sbjct 1213 GAAGGCTTTCGGGTCGTAAACCTCTGTCAGAAGGGAAGAACGGTTGTTGGTCTAATAGGC 1272 Query 380 --------TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT 431 ||||||||| | |||||||| |||||||||| |||||||||||||||||| Sbjct 1273 CTTCAATTTGACGGTACCTTCAGAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGT 1332 Query 432 AATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||||| |||| || |||||||| |||||||||| |||||||||| | |||||| | | Sbjct 1333 AATACGGAGGGTGCAAGCGTTATTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCCGCT 1391 Query 492 TCTTAAGTC 500 | |||||| Sbjct 1392 TTGTAAGTC 1400 >seq3603 Length=163330 Score = 324 bits (358), Expect = 4e-86 Identities = 279/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 108878 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 108937 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 108938 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 108997 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 108998 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 109057 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 109058 AGGCCCACGGGTCGTCAACTTCTTTTCCCGGAGAAGAATCAATGACGGTATCTGGGGAAT 109117 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 109118 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 109177 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 109178 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 109219 Score = 324 bits (358), Expect = 4e-86 Identities = 279/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 146363 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 146304 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 146303 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 146244 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 146243 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 146184 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 146183 AGGCCCACGGGTCGTCAACTTCTTTTCCCGGAGAAGAATCAATGACGGTATCTGGGGAAT 146124 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 146123 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 146064 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 146063 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 146022 >seq216 Length=876303 Score = 201 bits (222), Expect = 3e-49 Identities = 191/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||| ||||||||||||||| ||| || ||||||| ||| || |||||||||| | Sbjct 635469 CGCGTCCGATTAGCTAGTTGGTGAGGCAATAGCTTACCGAGGTGATGATCAGTAGCTGGT 635528 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 635529 CCAAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 635588 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || |||||||| ||||| ||| | ||||| |||||||| | || Sbjct 635589 CAGTGGGGAATTTTCTGCAATGGGCGAAAGCTTGACGGAGCAATGCCGCGTGGAGGTAGA 635648 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||| | |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 635649 AGGMCCACGGGTCGTCAACTTCTTTTCCCGGAGAAGAATCAATGACGGTATCTGGGGAAT 635708 Query 398 AAGC 401 |||| Sbjct 635709 AAGC 635712 >seq36 Length=5049855 Score = 196 bits (216), Expect = 1e-47 Identities = 146/172 (85%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||| |||||||||||| ||||| ||| || |||||| ||||||| |||||||||| | Sbjct 3189072 CGCATCTGATTAGCTAATTGGTGAGGCAATAGCTTACYAAGGCGATGATCAGTAGCTGGT 3189013 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 3189012 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 3188953 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||| || | |||||||| ||||||||| ||||| |||||||| Sbjct 3188952 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACAGAGCAATGCCGCGTG 3188901 >seq38 Length=4897333 Score = 174 bits (192), Expect = 5e-41 Identities = 130/151 (86%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 ||||||||||||||||| ||| || |||||||||||||| |||||||||| | | ||| Sbjct 4259127 CTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAG 4259186 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 ||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||||| Sbjct 4259187 AGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTG 4259246 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGAT 315 |||||| || | |||||||| ||||| ||| Sbjct 4259247 GGGAATTTTCCGCAATGGGC-GAAGCCAGAT 4259276 >seq126 Length=1828961 Score = 116 bits (128), Expect = 1e-23 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 1012806 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 1012865 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||| ||||| Sbjct 1012866 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAATGGGG 1012925 Query 288 AATATTGCACAATGGGC 304 ||| ||| ||||||||| Sbjct 1012926 AATCTTGGACAATGGGC 1012942 >seq45 Length=4419648 Score = 116 bits (128), Expect = 1e-23 Identities = 120/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCG 405 ||||||| || ||| ||| | ||||| |||||||||| || ||| |||| || Sbjct 2968621 GGGTCGTCAACTTCTTTCCACGGAGAAGAATCAATGACGGTATCTGGGGAATAAGCATCG 2968562 Query 406 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 465 ||||||| ||||||| |||||||||||||| ||| || ||||||||||||||| | | Sbjct 2968561 GCTAACTCTGTGCCAGTAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-T 2968503 Query 466 GGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| || |||||||| || | ||||| Sbjct 2968502 TGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 2968468 >seq2712 Length=1975 Score = 113 bits (124), Expect = 1e-22 Identities = 119/156 (76%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCC 404 |||||||| || ||| | | | ||||| |||||||||| || ||| |||| | Sbjct 1972 CGGGTCGTCAACTTCTTTTCCCGGAGAAGAATCAATGACGGTATCTGGGGAATAAGCATC 1913 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||||| |||| |||||| |||||||||| ||| || ||||||||||||||| | Sbjct 1912 GGCTAACTCTGTGCMAGCAGCMGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA- 1854 Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||||||| || |||||||| || | ||||| Sbjct 1853 TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 1818 >seq1 Length=14325340 Score = 100 bits (110), Expect = 9e-19 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 |||| ||| ||| |||| ||||||||| |||| ||||||||||||||||| ||| Sbjct 1321999 GGTATTTGGGGAATAAGCATCGGCTAACTTTGTGCAAGCAGCCGCGGTAATACAGAGGAT 1321940 Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || ||||||||||| ||| | | |||||||||| || |||||||| || | ||||| Sbjct 1321939 GCAAGCGTTATCCGAAATGA-TTGGGCGTAAAGTGTCTGTAGGTGGCTTTTCAAGTC 1321884 >seq79 Length=2879232 Score = 98.7 bits (108), Expect = 3e-18 Identities = 122/165 (74%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGA 395 ||||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 495660 GAAGGCCCACGGGTCGTCAACTTCTTTTCCCGGAGAAGAATCAATGACGGTATCTGGGGA 495719 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| ||||||||| |||||| || |||||||||||| ||| || |||||||| Sbjct 495720 ATAAGCATCGGCTAACTCTGTGCCAACAACCGCGGTAATACAGAGGATGCAAGCGTTATT 495779 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | | || ||||| || ||| |||| || | ||||| Sbjct 495780 CGGAATGA-TTGAGCATAAAGCGTTTGTAAGTGGCTTTTCAAGTC 495823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497546041472