Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2900 266 1e-68 seq3603 185 3e-44 seq217 118 4e-24 seq11 114 4e-23 seq111 91.5 5e-16 seq97 80.6 9e-13 seq96 80.6 9e-13 >seq2900 Length=1624 Score = 266 bits (294), Expect = 1e-68 Identities = 357/484 (74%), Gaps = 12/484 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTG-GGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || ||||||| ||| ||| || |||||||||| || |||||||| ||| Sbjct 956 CGAGTCTTAAATGGGCGACTAGTA-CTGCGGATTAGACCCGAAGCCGGGTGATCTATCCA 898 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||| | ||||| || |||||| ||||||| | |||||||| Sbjct 897 TGAGCAGGTTGAAGCTTGGGTAAAACCAAGTGGAGGACCGAACCGTTGTAAGTTGAAAAT 838 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||| |||||||||||||| || |||||| || |||||||||||| Sbjct 837 TACTCGGATGACTTGTGGATAGGGGTGAAAGGCCAATCAAACTCGGTGATAGCTGGTTCT 778 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCA--AGTATCACCATCGGGGGTAGAGCACTGTTA 237 |||||||| |||| ||||| |||||| ||| | || ||| |||||||||||| | Sbjct 777 CTCCGAAATATATTGAGGTATAGCCTCAGGAGT-TTACTTGCGGAGGTAGAGCACTGACA 719 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT-T 296 |||||||||| | | | ||||||||||| || |||||||||||||| | | |||| Sbjct 718 GGGCTAGGGGG-CTTACCCGCTTACCAAACCCTTTCAAACTCCGAATGC-CGTAAGTTAA 661 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | | |||||| || ||||| |||||| ||| ||||||| |||| || ||| Sbjct 660 GATCCTGGGAGTCAGACTGCGGGTGATAAGGTTCGTAGTCGAGAGGGAAAGAGCCCAGAC 601 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||||||| |||| |||||| | || || || | ||| |||| Sbjct 600 CGACAGCTAAGGCCCCTAAATCCATACTAAGTGGGA--AAGGAGGTGAAGTCGCTTAGAC 543 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||| |||| |||||||| |||||||||| | |||||||| |||||| |||||||| || Sbjct 542 AGCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGT 484 Query 477 CGAG 480 | || Sbjct 483 CTAG 480 >seq3603 Length=163330 Score = 185 bits (204), Expect = 3e-44 Identities = 396/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 113032 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 113091 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 113092 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 113151 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 113152 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 113211 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 113212 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 113266 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 113267 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 113324 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | || | || |||||| ||||| | |||| | | | | Sbjct 113325 CCCCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 113384 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 113385 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 113442 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 113443 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 113501 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 113502 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 113560 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 113561 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 113602 Score = 185 bits (204), Expect = 3e-44 Identities = 396/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 142209 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 142150 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 142149 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 142090 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 142089 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 142030 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 142029 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 141975 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 141974 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 141917 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | || | || |||||| ||||| | |||| | | | | Sbjct 141916 CCCCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 141857 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 141856 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 141799 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 141798 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 141740 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 141739 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 141681 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 141680 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 141639 >seq217 Length=876757 Score = 118 bits (130), Expect = 4e-24 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 460894 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 460835 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||| |||| ||| |||||||| ||| Sbjct 460834 ACCAGGATGAAGCTTGGGTGAAACTAAGCGGAGGTCCAAACCGACTGATGTTGAAGAATC 460775 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| | | ||| || |||||||||||| Sbjct 460774 AGCGGATGAGTTGTGGTTAGGGGTGAAATGYCACTYGAACCCAGAGCTAGCTGGTTCTCC 460715 Query 182 CCGAAA 187 |||||| Sbjct 460714 CCGAAA 460709 >seq11 Length=9900813 Score = 114 bits (126), Expect = 4e-23 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||| ||||||| |||||| |||||| |||| ||| | | || ||||| ||| |||| Sbjct 6278162 GACCACAAACCAATCGATCTAGCCATGGGCAGGTTGAGGAGAGCTCTAACAAGCCTTGGA 6278103 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||| |||| |||| | ||||| |||||| ||||| |||||||||||||| Sbjct 6278102 GGATTGAATCCACGTATGTGGCAAAATACCAGGATGACTTGTGGCTAGGGGTGAAAGGCC 6278043 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| | ||| |||||||||| || ||||| |||||| |||| || Sbjct 6278042 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGC 6277993 >seq111 Length=2052833 Score = 91.5 bits (100), Expect = 5e-16 Identities = 175/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | |||| | |||||| Sbjct 2038290 AGTGAGATGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCTCGGATCACCAGCTA 2038231 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| |||||| ||| ||| | | || || || | ||| ||||||| | || Sbjct 2038230 AGGCCCCTAAATGAMCGCTCAGTGATA--AAGGAGGTAAGGGTGCAGAGACAGCCATGAG 2038173 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| | | |||||||||| | || |||||| || ||| |||||||| || || || Sbjct 2038172 GTTTTCCTAGAAGCAGCCA-CCCTTGAAAGAGAGCATAATAGCTCACTGATCAAGCGCTC 2038114 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG- 544 ||| || || | |||| |||| ||| ||||||| ||||||| | | ||| Sbjct 2038113 TTGCGCCGAAGATGAACGGG-GCTAAGHGATCTGCCGAAGCTGTGGGAT-GTAAAAATGC 2038056 Query 545 ATCGGTAGGGGAG 557 ||||||||||||| Sbjct 2038055 ATCGGTAGGGGAG 2038043 >seq97 Length=2389559 Score = 80.6 bits (88), Expect = 9e-13 Identities = 109/147 (74%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 ||||||| |||| ||| || | |||||||||| | || ||||||||||||| ||||||| Sbjct 1388897 AGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCAC 1388955 Query 473 TAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG 532 | ||||| || || || || | |||| |||| ||| ||||||| ||||| Sbjct 1388956 TGATCGAGCGCTCTTGCACCGAAGATGAACGGG--CTAAGCAATCTGCCGAAGCTGTGGG 1389013 Query 533 ATCATTTATATG-ATCGGTAGGGGAGC 558 || | | ||| |||||||||||||| Sbjct 1389014 AT-GTAAAAATGCATCGGTAGGGGAGC 1389039 >seq96 Length=2395790 Score = 80.6 bits (88), Expect = 9e-13 Identities = 122/172 (71%), Gaps = 9/172 (5%) Strand=Plus/Minus Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 || |||||||| ||||| |||||||||||||| || ||| | || |||||||||| | Sbjct 1194978 TTCGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCAGATATAGCTGGTTTT 1194919 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCAT---CGGGGGTAGAGCACTGTT 236 || ||||| |||||| |||| || | | || | || | | ||||||||||| Sbjct 1194918 CTGCGAAATCTATTTCAGTAGAGCGT--ATGATGTCGATGGCCCGAGGTAGAGCACTCAA 1194861 Query 237 ATGGCTAGGGGG----TCATTGCGACTTACCAAACCATTGCAAACTCCGAAT 284 |||||||| | |||| | ||||||| || | ||||||||||| Sbjct 1194860 TGGGCTAGGGTGGCCCCCATTTCACTTTACCAACCCTAGGGAAACTCCGAAT 1194809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689539123712