Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq3444 284 2e-74 seq2900 167 4e-39 seq3603 129 1e-27 seq19 77.0 6e-12 >seq3444 Length=1094 Score = 284 bits (314), Expect = 2e-74 Identities = 255/319 (80%), Gaps = 1/319 (0%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||| | Sbjct 364 AGTGCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTGCAAGCCTGCGAAA 305 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||||| |||| | ||||||||||| |||| ||||||||||||||||| | Sbjct 304 AGCTACGGGGAGTTGGCAACGAAACTTTGATCCGTAGATATCCGAATGGGGAAACCCACC 245 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | |||| || ||| |||||| |||||||||| | |||||| ||| |||||||||| Sbjct 244 CGCAAGGGT-ATCCCATACTGAATCCATAGGTATGGGAGGCGAACCCGGTGAACTGAAAC 186 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 185 ATCTAAGTAGCCGGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGTGGCGAGCGAACA 126 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||| ||||| | ||||| ||| || || | ||| |||||| ||| | Sbjct 125 CGGAAAAGCCTGCTAGTGATAGCGGAACTGTTAATAGAACGGAATGGAAAGTCCGGCCGT 66 Query 301 AGCGGGTGATAGCCCCGTA 319 || |||||||||||||||| Sbjct 65 AGTGGGTGATAGCCCCGTA 47 >seq2900 Length=1624 Score = 167 bits (184), Expect = 4e-39 Identities = 196/264 (74%), Gaps = 17/264 (6%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || |||||||||||||||||||||| | |||||| ||||||||| | || ||||||| Sbjct 1621 AGGGCACATGGTGGATGCCTTGGCGTCAAGAGGCGAAGAAGGACGTGGAAGGCTGCGATA 1562 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||||||| ||| || |||||| ||| ||||||||||||||| |||||||| Sbjct 1561 AGCCTCGGGGAGCCGTCAAGCAGGCTTTGAACCGGGGATTTCCGAATGGGGCAACCCGGC 1502 Query 121 CCTTTGGGTCATTGC-----------ATGCTGAATACATAGG--TATGCAAAGCGAACGC 167 | | || || | ||||||||||||||| || | ||||||| | Sbjct 1501 ---TAGAGTAATGTCTAGTCACCCTTTTGCTGAATACATAGGCTTAAG-GGAGCGAACTC 1446 Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || ||| |||||||||| |||| | | |||| ||||||||| |||||||| ||||| Sbjct 1445 GGGGAAGTGAAACATCTCAGTACCCGAAGGAGTAGAAATCAAAAGAGATTCCGCTAGTAG 1386 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| |||||| Sbjct 1385 CGGCGAGCGAACGCGGAAGAGCCT 1362 >seq3603 Length=163330 Score = 129 bits (142), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 112407 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 112466 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 112467 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 112519 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 112520 C--TAC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 112576 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 112577 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 112636 Query 249 CCT 251 ||| Sbjct 112637 CCT 112639 Score = 129 bits (142), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 142834 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 142775 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 142774 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 142722 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 142721 C--TAC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 142665 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 142664 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 142605 Query 249 CCT 251 ||| Sbjct 142604 CCT 142602 >seq19 Length=7695933 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 5685350 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 5685291 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 5685290 GGCGAGCGAGAGCGGAT 5685274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918366910048