Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3603 197 5e-48 seq97 154 5e-35 seq93 113 2e-22 seq83 98.7 3e-18 seq77 93.3 1e-16 seq148 82.4 3e-13 >seq3603 Length=163330 Score = 197 bits (218), Expect = 5e-48 Identities = 393/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 114769 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 114710 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 114709 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 114651 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 114650 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 114591 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | ||| || | |||| | Sbjct 114590 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCAGAAG-GAGGCCT--T 114534 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 114533 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 114476 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 114475 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 114416 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 114415 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 114357 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 114356 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 114297 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 114296 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 114243 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 114242 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 114213 Score = 197 bits (218), Expect = 5e-48 Identities = 393/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 140472 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 140531 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 140532 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 140590 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 140591 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 140650 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | ||| || | |||| | Sbjct 140651 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCAGAAG-GAGGCCT--T 140707 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 140708 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 140765 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 140766 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 140825 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 140826 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 140884 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 140885 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 140944 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 140945 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 140998 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 140999 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 141028 >seq97 Length=2389559 Score = 154 bits (170), Expect = 5e-35 Identities = 375/558 (67%), Gaps = 21/558 (4%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| | | || ||||| | || || || | | || Sbjct 1390194 GTCTTGCAGTCAAGCTCCCTTCTDCCTTTGCACTCGAGGGCCAATCTCCGTCCGGCCCGA 1390135 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || |||||||| || ||||||||| | |||||||| | | |||||| ||||| | Sbjct 1390134 GGAAACCTTTGCACGTCTCCGTTACCTATTGGGAGGCCTAT-GCCCCATAGAAACTGTCT 1390076 Query 132 ACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTCA 188 ||| | |||||||| || || || || |||||||||| || | | || Sbjct 1390075 ACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGARTTCTAGCTCTTCCA 1390016 Query 189 GAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCATCATAGTCTCCC 245 ||||||||| ||| | | || | | || || | |||| || | | || || Sbjct 1390015 GAGTGGTATCTCACTGATGGCTTGGGCCCCCGCAGAAG-GAGGCCT--TCTTCGCCTTCC 1389959 Query 246 ACCTATCCTACACAA-ACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GG 303 ||||| || || | | ||| || |||||| ||| | | | | ||| | | || Sbjct 1389958 ACCTAAGCTGTGTAAGAAAGGACCAAA-GCCAATCCCAGGGAACAKTAAAGCTTCATAGG 1389900 Query 304 GTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCC 363 |||||| |||| | || | | ||||||| || | | ||||||||| ||| Sbjct 1389899 GTCTTTCTGTCCAGGTGCTGGTAGTCCGCATCTTCACAAACATGTCTATTTCACCGAGCC 1389840 Query 364 TGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGAC 422 | | |||||| | || |||||||||| | ||||| ||||||||||||||| || Sbjct 1389839 TCTCTCCGAGACA-CTTCCCAGATCGTTACGCCTTACGTGCGGGTCGGAACTTACCCDAC 1389781 Query 423 AAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 |||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||| | Sbjct 1389780 AAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCGTTCACTAGGGCTTTGGT 1389721 Query 483 TACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGC 542 | ||| ||| || || | | |||| | ||| ||||||| ||| |||| Sbjct 1389720 CA-CCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGRCACTGGGC 1389667 Query 543 AGGCGTCAGTCCGTATAC 560 ||||||||| || |||| Sbjct 1389666 AGGCGTCAGCCCCCATAC 1389649 >seq93 Length=2437659 Score = 113 bits (124), Expect = 2e-22 Identities = 131/177 (74%), Gaps = 10/177 (6%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| || |||||||| ||||||||||||| ||||| |||||| |||||||||||| Sbjct 148599 TCGTTATACCTTTCGTGCAAGTCGGAACTTACCTGACAAAGAATTTTGCTACCTTAGGAC 148540 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACC--CGCCTCACACACCACGT 503 |||||||||| | ||||||| |||||||||| | | || |||| | | || Sbjct 148539 CATTATAGTTACGATCGCCGTTCACTGGGGCTTTAGTCGCCATTTCCTCTCTTATCA--- 148483 Query 504 GGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 148482 -----GGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 148431 >seq83 Length=2710307 Score = 98.7 bits (108), Expect = 3e-18 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 398 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 |||||||||||| ||||| | ||||||||||||||||||||||||| |||| |||||| Sbjct 693240 TCGTGCAGGTCGCTACTTATGCRACAAGGAATTTCGCTACCTTAGGATAGTTAGAGTTAC 693181 Query 458 CACCGCCGTTTACTGGGGCTTCAATT 483 || ||||||| |||||||| ||| Sbjct 693180 TGCCACCGTTTATCGGGGCTTCCATT 693155 Score = 80.6 bits (88), Expect = 9e-13 Identities = 116/163 (71%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||| ||||| | Sbjct 695428 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCA 695369 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| ||| | | ||||||| || | | ||||||||| | Sbjct 695368 CGGGGTCTTACCGTCTAGCCATTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 695309 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTG 402 || | || |||||||| ||| ||||||||| ||||||||| Sbjct 695308 GGTCCATGTCGGAGACAGCRGGGCAGTCGTTACACCATTCGTG 695266 >seq77 Length=2932519 Score = 93.3 bits (102), Expect = 1e-16 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| ||| ||| |||||||||||| ||| ||| |||||| |||| ||||||| | Sbjct 666179 GTTACGCCTTTCCTGCGGGTCGGAACTTAACCGGCAAAGAATTTTGCTATCTTAGGACTG 666120 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||| |||||||| |||| || || Sbjct 666119 TTATAGTTATGGCCGCCGTTCACTGAGGTTT 666089 >seq148 Length=1487851 Score = 82.4 bits (90), Expect = 3e-13 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 ||||||||| ||| | || |||||||||||||| ||| |||| | ||||||||| | | Sbjct 167046 CAATTTCACTGGGTCCATG-TTGAGACAGCAGGGCAGTTCTTACAC-ATTCGTGCACGCC 167103 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAG 442 | ||||| | ||||||||||| |||||||||| Sbjct 167104 GCTACTTATGCAACAAGGAATTTTGCTACCTTAG 167137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702338662528