Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq3046 179 8e-43 seq3603 127 4e-27 seq216 111 3e-22 seq126 100 6e-19 seq36 100 6e-19 seq38 98.7 2e-18 >seq3046 Length=1400 Score = 179 bits (198), Expect = 8e-43 Identities = 218/294 (74%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTAC------ATACAAG--CTC 52 ||||||||||||||||||||||| ||||| || ||||||| || ||| || Sbjct 1327 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCCTCTGAAGGTACCGTCAAATTGAAGGCCTA 1268 Query 53 CCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | || || || ||||||| | | ||| |||||| | ||| | | |||||||| Sbjct 1267 TTAGACCAACAACCGTTC-TTCCCTTCTGACAGAGGTTTACGACCCGAA-AGCCTTCATC 1210 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 | |||| | | | |||| |||| || ||| |||||| ||||||||| |||||||||| Sbjct 1209 CCTCACACGGCGTTGCTGCGTCAGGCTTTCGCCCATTGCGCAATATTCCCCACTGCTGCC 1150 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| |||||||||| ||||||||| |||| || | |||||||||| | Sbjct 1149 TCCCGTAGGAGTCTGGACCGTGTTTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 1090 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286 || |||||| | || ||| |||| |||||| || |||| |||||| |||| Sbjct 1089 TTACTCATCGTTGCCTTGGTAGGCCATTACCCTACCAACTAGCTAATGAGACGC 1036 >seq3603 Length=163330 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 109146 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCA------------T 109099 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 109098 TGA-----TTCTTCTCCGGGAAAAGAAGTTGACGACCCGTGGG-CCTTCTACCTCCACGC 109045 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 109044 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 108985 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 108984 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 108925 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 108924 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 108886 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 146095 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCA------------T 146142 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 146143 TGA-----TTCTTCTCCGGGAAAAGAAGTTGACGACCCGTGGG-CCTTCTACCTCCACGC 146196 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 146197 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 146256 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 146257 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 146316 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 146317 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 146355 >seq216 Length=876303 Score = 111 bits (122), Expect = 3e-22 Identities = 149/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| ||| || Sbjct 635674 AAAAGAAGTTGACGACCCGTGGK-CCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTT 635616 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 635615 TCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 635556 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||| || | ||| ||| | || ||| || || Sbjct 635555 TCCCAGTGTGGCTGATCATCCTCTTGGACCAGCTACTGATCATCACCTCGGTAAGCTATT 635496 Query 261 ACCCCGCCTACTACCTAATGGAACGC 286 || | || |||| ||||| | |||| Sbjct 635495 GCCTCACCAACTAGCTAATCGGACGC 635470 >seq126 Length=1828961 Score = 100 bits (110), Expect = 6e-19 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 137 ACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTC 196 ||||||| |||||| |||| ||||| || ||||||| ||||| ||||| || ||||||| Sbjct 1012948 ACTCTCGCCCATTGTCCAAGATTCCCCATTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTC 1012889 Query 197 TCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGC 256 ||||| ||| ||||| || | ||| ||| | ||| |||| | |||| ||| || Sbjct 1012888 TCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGC 1012829 Query 257 CGTTACCCCGCCTACTACCTAAT 279 | ||||| || |||||||||| Sbjct 1012828 CTTTACCTGACCAACTACCTAAT 1012806 >seq36 Length=5049855 Score = 100 bits (110), Expect = 6e-19 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 111 TCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTG 170 |||| ||||| | | ||| |||| || ||| |||||| || ||||| |||||||| Sbjct 3188896 TCCTCCACGCGGCATTGCTCTGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTG 3188955 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||| || Sbjct 3188956 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 3189013 >seq38 Length=4897333 Score = 98.7 bits (108), Expect = 2e-18 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 4259268 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 4259209 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 4259208 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 4259149 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 4259148 GCCTCACCAACTAGCTAAT 4259130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068761491136