Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1963 96.9 6e-18 seq2237 95.1 2e-17 seq995 93.3 7e-17 seq399 91.5 2e-16 seq93 82.4 1e-13 seq62 80.6 4e-13 seq1387 77.0 5e-12 seq1080 77.0 5e-12 seq268 77.0 5e-12 >seq1963 Length=6048 Score = 96.9 bits (106), Expect = 6e-18 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || |||| | ||||||| | | | || ||| || |||| Sbjct 5558 GTACAAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGYGCTTGGTTGAAAAGCCAGT 5615 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 5616 GGCACGAAGCTACCATGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 5669 >seq2237 Length=4647 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| ||||| || ||| || | || Sbjct 4261 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATTGCGCTTGGTTGAAAAGCCTGT 4318 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| ||| ||||||| |||| |||||||||||||||||| Sbjct 4319 GGCGCGAAGCTACCATGTGCCAGATTATGATTGAATGCCTCTAAGTCAGAATCC 4372 >seq995 Length=16624 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 799 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 742 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||| ||| ||||||| |||| ||||||||||||||||| Sbjct 741 GGCGCGAAGCTACCATGTGCCAGATTATGATTGAATGCCTCTAAGTCAGAATC 689 >seq399 Length=188268 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| | || |||| | ||||||| | ||| || ||| || |||| Sbjct 87254 GTACAAGAGGAACTGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 87197 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||| |||||||| |||||||||||||||||| ||||| Sbjct 87196 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCATAATCC 87143 >seq93 Length=2437659 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | || | ||| || |||| Sbjct 1540745 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCACTTTGTTGAAAAGCCAGT 1540802 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||| | ||| ||||||| |||||| ||||||||||||||||| Sbjct 1540803 GGCACGAAGCTACCGTGTGCCAGATTATGACTGAACACCTCTAAGTCAGAATCC 1540856 >seq62 Length=3435397 Score = 80.6 bits (88), Expect = 4e-13 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| ||||||||||| | ||| |||||||| ||||||||||||||||||||||| Sbjct 3311093 AGCCAGTGGYGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATC 3311034 Query 114 C 114 | Sbjct 3311033 C 3311033 >seq1387 Length=10348 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | || |||| | ||||||| | | | || ||| || |||| Sbjct 6187 GTATGAGAGGAACTGTAGA-TTCACAC-AATTGGTCATCGGGCTTGGTTGAAAAGCCAGT 6244 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||| |||||||| || || |||||||||||||| ||| Sbjct 6245 GGCGCGAAGCTACCGTGTGCCGGATTATGACTCAATGCCTCTAAGTCAGAGTCC 6298 >seq1080 Length=16150 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | | ||||||| | ||| || ||| || |||| Sbjct 174 GTACGAGAGGAACCGTTGA-TTGACAC-AATTGGTCATCGCGCTTGATTGAAAAGCCAGT 231 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || ||||||||| | ||| ||||||| |||||| ||||||||||||| ||| Sbjct 232 AGCGTGAAGCTACCGTGTGCCAGATTATGACTGAACACCTCTAAGTCAGAGTCC 285 >seq268 Length=550030 Score = 77.0 bits (84), Expect = 5e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 462570 CGCGAAGCTACCATGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 462519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819171406592