Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq327 688 0.0 seq3566 434 3e-119 seq238 342 2e-91 seq440 192 2e-46 seq4 174 5e-41 seq1387 145 2e-32 seq93 120 9e-25 seq6 105 2e-20 seq150 100 9e-19 >seq327 Length=402351 Score = 688 bits (762), Expect = 0.0 Identities = 462/507 (91%), Gaps = 9/507 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||| | | |||||||||| ||||| ||||||||| || Sbjct 319511 GTACTCATTCCAATTACAAGACCTATGAAAGCCCTGTATTGTTATTTTTTGTCACTATCT 319452 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 319451 CCCCGTGTCGGGATTGGATAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 319392 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 319391 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGCAACCATGGTA 319332 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||| || Sbjct 319331 GGCCTCTATCCTACCATCGACAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCAGCA 319272 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| ||||||||| ||||||||||||||||||| | | ||| ||| | ||| Sbjct 319271 CAAGGCCGTGCGATTCGAGAAGTTATTATGAATCACCA---AACTCCG-AGGAGGATGG- 319217 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTA-GCATGTATTAGCTC 357 ||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| Sbjct 319216 TTTTTATCTAATAAATACACCCCTTCCAGAAGTCGGGGCTTTTTACGCATGTATTAGCTC 319157 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||||||||||| ||||||||||||| ||| || ||||||||||| ||||||||||||| Sbjct 319156 TAGAATTACCACAGTTATCCATGTAGCAAGAAAC-ATCAAATAAACTATAACTGATTTAA 319098 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| Sbjct 319097 TGAGCCATTCGCAGTTTCACAGTATAATTTGCGTATACTTAGACATGCATGGCTTAATCT 319038 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 319037 TTGAGACAAGCATATGACTACTGGCAG 319011 Score = 354 bits (392), Expect = 2e-95 Identities = 285/338 (84%), Gaps = 7/338 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | | |||| | |||| ||||||| ||||||| || Sbjct 97411 GTACTCATTCCAATTACCAGACTCGTA-GAGCTCGGTATTGTTATTTATCGTCACTATCT 97353 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 97352 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTATCCGTT 97293 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||| Sbjct 97292 TCTTAGGCTCCCTCTCCGGAATCGAACCCTAATTCTACGTTACCCGTCACCACCATAGTA 97233 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| Sbjct 97232 GGCCACTATCCTACCATCGAAAGTTGATAGGGTAGAAATTTGAATGATGCGTCGCCGGCA 97173 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGC---G 295 | |||||| |||||| ||| |||||| |||||||| || || | | || | | | Sbjct 97172 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACAGGCAAAGCCCATG 97113 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGT 332 | | ||||||||||||||| || ||||||| ||||| Sbjct 97112 TCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGT 97075 Score = 114 bits (126), Expect = 4e-23 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 419 GAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| || | | || | | ||||||| |||||||||||||||||| Sbjct 120315 GAGCCATTCGCAGTTTCACAGTCTGAAATAGTTCATACTTACACATGCATGGCTTAATCT 120256 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| |||| Sbjct 120255 TTGAGACAAGCATATGACTACTDGCAG 120229 >seq3566 Length=1000 Score = 434 bits (480), Expect = 3e-119 Identities = 341/402 (85%), Gaps = 7/402 (2%) Strand=Plus/Minus Query 106 GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCC 165 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1000 GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTTACCC 941 Query 166 GTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 ||| | ||||||||| ||| || ||||||||||||| |||| ||||||||| |||||| Sbjct 940 GTTAAAGCCATGGTAGTCCAATACACTACCATCGAAAGCTGATGGGGCAGAAACTTGAAT 881 Query 226 GAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC 284 || |||| ||| ||| |||||||||||| | ||||||||||| || || | || Sbjct 880 GATGTATCG-CGGACAAAGTCCATGCGATTCGATCAGTTATTATGATTCGTCACAATAGA 822 Query 285 CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTT 342 | | | | ||||||| |||||||||||||||| ||||||| ||||| || || Sbjct 821 CACAAGGAATATTGGTTTGTTATCTAATAAATACAGCCCTTCCTAAAAGTCAGGCTTAAC 762 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 761 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-AATTCGATTATCAAATAAA 703 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 | ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 702 CTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTATAACAT--TTATACTTAGACA 645 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| |||||||||||||||||||||||||||||| Sbjct 644 TGCATGGCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 603 >seq238 Length=749163 Score = 342 bits (378), Expect = 2e-91 Identities = 293/355 (83%), Gaps = 12/355 (3%) Strand=Plus/Plus Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 680322 GTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 680381 Query 219 TTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277 ||||||||| | ||| ||| | |||||| |||||| ||| ||||||| |||||||| | Sbjct 680382 TTTGAATGATGCGTCGTTGGCACGAAGGCCGTGCGATCCGTCAAGTTATCATGAATCATC 680441 Query 278 AAGGAGCCCCG----AAG--GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAA 330 | |||| || ||| || ||| ||||||||||||||| || | ||||| ||| Sbjct 680442 A--GAGCAACGGGTAAAGCCCGCATTGACCTTTTATCTAATAAATGCATCACTTCCAGAA 680499 Query 331 GTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA 390 |||||||||| |||||||||| ||||||||||| || ||||| | ||||| || || Sbjct 680500 GTCGGGGTTTGGTGCATGTATTAATTCTAGAATTACTACAGTTATTCGAGTAGT-AGATA 680558 Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGC 449 | |||||| |||| |||||||||||||||||||||||| |||||||| || | | || | Sbjct 680559 CCATCAAACAAACTATAACTGATTTAATGAGCCATTCGTAGTTTCACAGTCTGAAATAGT 680618 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 680619 TCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGYAG 680673 >seq440 Length=118110 Score = 192 bits (212), Expect = 2e-46 Identities = 164/197 (83%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 310 AATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 ||| ||| || ||||||| ||||||||||||| || ||||| ||||||||||| | Sbjct 24972 AATGAAT-CATCCCTTCCAGAAGTCGGGGTTTGGTCCACATATTATATCTAGAATTACTA 25030 Query 369 CGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 | |||||||| |||||| | ||| || ||| |||| |||| |||||||||||||||||| Sbjct 25031 CAGTTATCCAAGTAGTA-GATACCATTAAACAAACTATAAATGATTTAATGAGCCATTCA 25089 Query 429 CAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||| || | || | | || ||||||| |||||||||||||||||||||||||||| Sbjct 25090 CAGTTTGACAATCTAAAATAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAG 25149 Query 488 CATATGACTACTGGCAG 504 ||||||||||||||||| Sbjct 25150 CATATGACTACTGGCAG 25166 >seq4 Length=11052854 Score = 174 bits (192), Expect = 5e-41 Identities = 166/211 (79%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||| |||| |||||| ||| | | |||| |||| |||| || || | ||||| Sbjct 10307576 GTACTTATTCAAATTACTAGATTCGTA-GAGCTTGGTATTGTTATTAATGGTTAATACCT 10307634 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| || | ||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct 10307635 CCCTGTATTAGGATTGGGTAATTTGCGTGCCTG-----TTCCTTGGATGTGGTAGCCATT 10307689 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| ||||||| ||| |||| |||||||||||| || | |||||| ||||| || Sbjct 10307690 TCTTAGGCTCCTTCTTTAGAATTGAACCCTAATTCTCCATCACCCGTCACCACCATACTA 10307749 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGG 211 ||| ||||||||||||||||||||||||||| Sbjct 10307750 GGCTACTATCCTACCATCGAAAGTTGATAGG 10307780 >seq1387 Length=10348 Score = 145 bits (160), Expect = 2e-32 Identities = 102/115 (89%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | | |||||| |||| |||||||||||||||||| Sbjct 114 GTACTCATTCCAATTACCAGACTCGTA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 56 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 55 CCCCGAGTCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTAGGATGTGGTAG 1 >seq93 Length=2437659 Score = 120 bits (132), Expect = 9e-25 Identities = 86/98 (88%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | | |||||| |||| |||||||||||||||||| Sbjct 1544382 GTACTCATTCCAATTACCAGACTCGTA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1544324 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCC 98 ||||||||| |||||||||||||||| |||||||||| Sbjct 1544323 CCCCGTGTCAGGATTGGGTAATTTGCATGCCTGCTGCC 1544286 >seq6 Length=10738081 Score = 105 bits (116), Expect = 2e-20 Identities = 153/212 (72%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTAT----TAGCT 356 ||||||||||| ||| || |||||| |||||| ||||| ||| |||| || || Sbjct 2229666 TTTTATCTAATGAATGCATCCCTTCTAGAAGTCAAGGTTTAATGCAAGTATATATTAACT 2229607 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||| | ||||||| | |||| || || || ||| |||| |||||| ||| | Sbjct 2229606 CTAGAATTAATATGGTTATCTAAATAGT-AGATATCATAAAACAAACTATAACTAATTAA 2229548 Query 417 ATGAGCCATTCGCAGTTTCACTGT-----ATAGATTGCTTATACTTAGACATGCATGGCT 471 ||||| |||| || ||||| || |||| | | | ||| || ||||| || || Sbjct 2229547 ATGAGTCATTTCCAAATTCACAGTTTGAAATAGTTCACATTTAC-TACACATGTATCACT 2229489 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||| | ||| | |||| |||| || || Sbjct 2229488 TAATCTTTAAAACATGTATATAACTATTGACA 2229457 Score = 96.9 bits (106), Expect = 1e-17 Identities = 174/245 (71%), Gaps = 17/245 (7%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGAT------TGGGTAATTTGCGCGCCTGCTG 96 |||||||| ||| |||||||| ||| ||| ||||||||||| | |||| Sbjct 2230082 TATTTATTTTCATTACCTCCCTATGTTAAGATACATAATGGGTAATTTGTGTAG-TGCTA 2230024 Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCT-CTCCGGAATCGAACCCTAATTC 155 |||| | | ||||| || | || ||| | | || || ||||||||| |||||||| Sbjct 2230023 CCTTT-TAGAATGTGAGAGTCACTTTTCAAGTTTTCTTCTTTGGAATCGAAGCCTAATTC 2229965 Query 156 CCCGTTACCCGTTGAT-ACCATGGTAGGCCACTATC--CTACCATCGAAAGTTGATAGGG 212 | | |||| | | ||| | |||||||||||| |||||| ||||||||||||| Sbjct 2229964 TCTATGACCCAATTACCACCTTAATAGGCCACTATCAACTACCA---AAAGTTGATAGGG 2229908 Query 213 CAG-AAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATG 270 ||| |||||||||||| |||| || | |||||| ||| | | ||||||| ||| Sbjct 2229907 CAGAAAATTTGAATGATGCATCATCGATACAAAGGCCGTGCAGCCCATCAAGTTATAATG 2229848 Query 271 AATCA 275 ||||| Sbjct 2229847 AATCA 2229843 >seq150 Length=1472857 Score = 100 bits (110), Expect = 9e-19 Identities = 145/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAAT-ACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || || | | |||||| |||||| ||| ||||||||||||| Sbjct 1464838 TTTTATCTAATAAATGACTCCATTACAGAAGTCCGGGTTTGGTGCACGTATTAGCTCTAG 1464779 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| || ||||| || |||||| | | || |||| |||||| | ||||||| Sbjct 1464778 AATTACTACAGTTATTCAAGTAGTATATGCCATTGGAAAAAACTATAACTAACTTAATGA 1464719 Query 421 GCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||| | | ||| | | ||| | | ||||| | ||| | | |||||| | || Sbjct 1464718 CCCATTAGAAATTTTATATTCGGAATTAGTTCATACTAACACAAGTTTAGCTTAACCATT 1464659 Query 480 GAGACAA-GCATATGACTACT 499 |||| || ||||| | |||| Sbjct 1464658 GAGAAAAGGCATACAAATACT 1464638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510345580288