Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq8 161 8e-35 seq6 156 3e-33 >seq8 Length=10307871 Score = 161 bits (178), Expect = 8e-35 Identities = 549/840 (65%), Gaps = 14/840 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || || ||| | ||| |||| Sbjct 4256649 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACTGCCGAAGAAGTTGATCTCTCCCAAGAT 4256590 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| || | | || |||| ||||||| ||||| |||| Sbjct 4256589 CTCCGTCACTGGGAAATCCTAACCCATGACGAGAAACACTTCATTACTCATGTACTGGCC 4256530 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || ||||| |||||||| || || || | | || ||| | |||| Sbjct 4256529 TTCTTCGCTGCTTCTGACGGTATTGTTCTCGAAAACCTCGCTGCTCGGTTCATGAAGGAA 4256470 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||| | || ||||| ||| || ||||| ||||| || || || ||||| ||||| Sbjct 4256469 GTCCAAATCTCCGAGGCCCGTGCATTTTACGGTTTCCAAATCGCTATTGAGAACATCCAC 4256410 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394 || ||||||||||| | | | || | ||||||| ||| ||| || | | | || Sbjct 4256409 TCCGAGATGTACAGCCTCTTGTTGGAATCATACATCAAGGATTCGGCCGAGAAGAG-CCG 4256351 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| || |||||||| | || ||| | ||||| || |||||| || | Sbjct 4256350 CCTGTTCCGCGCAATCGAGACCGTCCCCTGCGTGGCGAAAAAAGCCGAGTGGGCCCTCCA 4256291 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| | || | || | | || | || || || | ||||| || ||||| Sbjct 4256290 ATGGATCGACGGTTC--CGAAT-CCTTCGCGGAGCGCCTGATCGCATTCGCCTGCGTCGA 4256234 Query 61515 GGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 ||| |||| ||| || | | | || || || || ||||||||||| || || || | Sbjct 4256233 GGGGATATTCTTCTCCGGCAGCTTCTG-TGCGATATTCTGGTTGAAGAAGCGCGGCCTGA 4256175 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || | || ||| || |||||||| || | |||||||| | || || |||| Sbjct 4256174 TGCCGGGCTTAACTTTCTCAAACGAGTTGATCTCGAGAGACGAGGGGCTACACTGCGATT 4256115 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || | |||| | | | | | | || | | | | |||||||| || | Sbjct 4256114 TCGCGTGTCTGCTCTACGA--GTTGT-TGAGGCAGAAACTGAGTGAGGAGCGAGTCAAGG 4256058 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 |||||| || || || ||||| ||| || || ||||| ||| |||| | Sbjct 4256057 GAATTGTTGCCGACGCAGTGGACATCGAGAGGGAGTTCGTGTGCGACGCATTG-CCGTGT 4255999 Query 61754 -CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | | | || ||||| |||| || ||| |||||||| || || || ||||| ||| Sbjct 4255998 GCGTTGGTGGGGATGAACTGTGATCTGATGAGCCAGTATATCGAGTTCGTGGCCGATCGT 4255939 Query 61813 CTG-TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 || | ||| || || |||| | |||||| || | || || ||||||| || Sbjct 4255938 TTGCTCGGTGCCTTGGGATATGGA-AAGATCTACAACGTTCAGAATCCGTTTGATTGGAT 4255880 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| |||| ||| || | || || || ||||| ||||||||| | || || || || || Sbjct 4255879 GGAGCTGATCTCGTTGCAGGGGAAAACCAATTTCTTCGAGAAAAGGGTTGGAGAATACCA 4255820 >seq6 Length=10738081 Score = 156 bits (172), Expect = 3e-33 Identities = 547/841 (65%), Gaps = 16/841 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || || || |||||||| | || || || || | ||| |||| Sbjct 5633279 ATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTTGACCTCTCCCAAGAT 5633338 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | ||||||||| | || | ||| || |||| ||||||| | ||| | || Sbjct 5633339 CTACGTGACTGGGAAAATCTAACTCACGGCGAGAAACACTTCATTACTCTTGTTCTCGCC 5633398 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || ||||| || ||||| || | || || | |||||| | | || Sbjct 5633399 TTCTTCGCTGCTTCTGATGGTATTGTTATCGAAAACCTGGCCTCTCGTTTCATGAAAGAA 5633458 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||| || ||||| ||| |||||||| ||||| || || || ||||| |||| Sbjct 5633459 GTTCAAAATTCCGAGGCTCGTGCCTTCTACGGTTTCCAAATAGCAATCGAGAACATCCAT 5633518 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAAC 61393 |||||||||||||| | | | || | ||||||| ||| || | || ||| | | Sbjct 5633519 TCGGAGATGTACAGCCTCTTGTTAGAATCCTACATCAAGGATGCAGCCGAGAAAA--ACC 5633576 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC-CTTC 61452 | |||| | || || ||||| || || ||| | |||||| | ||| | |||| Sbjct 5633577 GTCTGTTTCACGCAATTGAGACTATCCCTTGCGTGGAAAAGAAAGCTCAGTGGACACTTC 5633636 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| |||||| | || | || | ||||| | | || || || ||| Sbjct 5633637 G-TTGGATTACCAGTTC---GGAATCTTTCGCCGAACGTCTAGTCGCCTTCGCCTGCGTC 5633692 Query 61513 GAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 ||||| |||| ||| ||| | | ||||| || || || |||||||||||||| || | Sbjct 5633693 GAGGGGATATTCTTCTCTGGCAGCTTTTGC-GCGATATTCTGGTTGAAGAAACGCGGGTT 5633751 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || | || || || |||||||||||| | |||||||| |||| || || Sbjct 5633752 GATGCCGGGGTTAACATTTTCAAACGAGTTGATATCAAGAGACGAGGGGTTGCACTGCGA 5633811 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 ||| ||| |||||| | | | | || | | | | || ||||| ||| Sbjct 5633812 TTTCGCTTGCCTGCTATACGA---GTTTTTGAAGCAGAAGCTGAGTGAAGAGCGAGTGAA 5633868 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | || ||| || ||||| ||||| ||| || | ||||| || || Sbjct 5633869 AGGAATCGTTGCGGAAGCGGTGGAAATCGAGAGGGAGTTCGTATGCGACGCATTACCATG 5633928 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | | || ||||| || || ||| ||||| || || || || ||||| | Sbjct 5633929 TGCGTTAGTGGGAATGAACGCTGATCTGATGAGTCAGTACATCGAGTTCGTGGCCGATAG 5633988 Query 61812 TCTG-TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCA 61870 || |||| || || || | | ||| || ||| | ||||| ||||||| | Sbjct 5633989 GTTGCTTGGAGCCTTGGGATACGGA-AAGATATACAATGTTCAGAACCCTTTTGATTGGA 5634047 Query 61871 TGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATC 61930 |||| ||||||| | | || ||||| ||||| || |||||||| || |||||||||| Sbjct 5634048 TGGAGTTGATTTCTTTACAAGGGAAGACCAATTTCTTTGAGAAACGGGTTGGCGACTATC 5634107 Query 61931 A 61931 | Sbjct 5634108 A 5634108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550542167920