Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq299 96.9 5e-15 seq3444 86.0 9e-12 seq69 84.2 3e-11 >seq299 Length=422275 Score = 96.9 bits (106), Expect = 5e-15 Identities = 174/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 162580 AACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGC 162639 || ||||||||| ||| | ||| || | | || ||||| |||||||||||| Sbjct 49138 AATTACAGGGAAGCCTACGGCATCTTCGCATGCAATGGGATTCTCTTCAATCACGAATCG 49079 Query 162640 TCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGT 162699 | ||| | || |||| ||||| || || ||||| ||||| || ||| || | Sbjct 49078 CCCCGCCGTGGTGAGAATTTCGTGACTCGGAAGATAACTCGAGCAGTGGGCCGGATCAAG 49019 Query 162700 GTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCC-CGACGTGACTGGGGACA 162758 || || || || | | | || | || || | | ||| ||| | |||||||| Sbjct 49018 GTTGGGCTGCAGAATAAACTGTTTTTGGGCAATTTGCAGGCCTCGAGG-GACTGGGGTTT 48960 Query 162759 CGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTA 162818 || ||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 48959 TGCGGGAGATTACGTCGAGGCAATGTGGTTGATGCTTCAGCAGGAGAAGCCAGACGATTA 48900 Query 162819 TGTGATCGCAAC 162830 ||| | ||||| Sbjct 48899 CGTGGTGGCAAC 48888 >seq3444 Length=1094 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 658 CGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGAT 599 Query 142852 TCCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 598 CCCGTCATCCTCCACCA 582 >seq69 Length=3072834 Score = 84.2 bits (92), Expect = 3e-11 Identities = 172/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 162579 AAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAG 162638 |||||| ||||| || | ||| |||| | ||| |||| |||||||||||| Sbjct 426945 AAACTATAGGGAGGCTTACGGCATCTTCGCCTGCAACGGGGTTCTCTTCAATCACGAATC 427004 Query 162639 CTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAG 162698 | ||| | || |||| ||||| || |||||||| ||||| || ||| || | Sbjct 427005 GCCGCGCCGTGGTGAGAATTTCGTGACTCGCAAGATAACTCGAGCAGTGGGCCGGATCAA 427064 Query 162699 TGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCC-CGACGTGACTGGGGAC 162757 || || ||||| ||| | ||| | || || | | || ||| | || ||||| Sbjct 427065 GGTCGGGCTCCAGAGTAAACTATTCTTGGGCAATTTGCAGGCTTCGAGG-GATTGGGGGT 427123 Query 162758 ACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATT 162817 || |||||| || || || |||||||| ||||||||||| || ||||| ||||||| Sbjct 427124 TTGCGGGAGACTATGTCGAAGCGATGTGGTTAATGCTTCAGCAGGACAAGCCGGATGATT 427183 Query 162818 ATGTGATCGCAAC 162830 | ||| | || || Sbjct 427184 ACGTGGTGGCGAC 427196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691428058406280