Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15]
37,194 sequences; 2,365,682,703 total letters
Query= AAMG01001210.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
seq2382 389 2e-105
>seq2382
Length=181302
Score = 389 bits (430), Expect = 2e-105
Identities = 314/380 (83%), Gaps = 21/380 (6%)
Strand=Plus/Plus
Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331
||| ||||||||||||||||| || |||||||| ||||||||| ||||||||||||| |
Sbjct 96226 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCTGGAGGATTTGGTGT 96285
Query 332 AAGGAGCAGCCCCATTTCGGCT---AAAGTGGAGATGGATCAAACAACAA---TGAAGAT 385
|||||||||||||||||| || ||||||||||||||||| ||||||| |||||||
Sbjct 96286 AAGGAGCAGCCCCATTTCATCTTCTAAAGTGGAGATGGATCAGACAACAACAGTGAAGAT 96345
Query 386 GGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTC 445
|||||||||||||||||||||||||||||||||||||||| | || |||||||| || ||
Sbjct 96346 GGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTATC 96405
Query 446 CTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGA 505
||||||||||| ||||||||||||||||||||||||| | | | |||||||||||| |
Sbjct 96406 TTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCGGATCCGGTACCGCA 96465
Query 506 GCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGA 565
| || ||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||
Sbjct 96466 GACGGTGAAGGTGGAATCTGAGGCCAAGAGGAGGCCTGAGGAATCTGAATT---TATGGA 96522
Query 566 GAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAG 625
|||||| | ||| || || ||| |||||||| | | |||| | ||
Sbjct 96523 GAGTAAGGAGGAGGT------------GAGGGAATCTTCTACTTTGGGAGCAGAAAATAG 96570
Query 626 TAGTATTCATGAGGTTGCTG 645
||||| || ||||| |||||
Sbjct 96571 TAGTAATCGTGAGGATGCTG 96590
Score = 228 bits (252), Expect = 3e-57
Identities = 200/245 (82%), Gaps = 23/245 (9%)
Strand=Plus/Plus
Query 48 GGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT---CCTGAA 104
|||||||||||||| || |||||||||||||| |||||||||||||| || ||||||
Sbjct 95906 GGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAACAACCCTGAA 95965
Query 105 GAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCATCATGGACC 157
||||| |||||||||||||||||||| | | || |||| |||| || |||||
Sbjct 95966 GAGCTAGAGATTGAGATTGCTGAAGTGTTATACGGGTTGATGACTCAGTCA-CAAGGACC 96024
Query 158 TTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGTTAATAATAA 211
||||| ||||| ||||| ||| |||||||| ||||||||||| |||| |
Sbjct 96025 ATCCAAGAAAGA---AAGTGGAGGAGGACCAAATGATACAACAAGAGAAGTCAATA---A 96078
Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 96079 CAGATCCAGAGTTTCTTCTCCTGTTTCAAATTCTAACTCATCAGCTACTCCTTTATCTGC 96138
Query 272 TGCTG 276
|| ||
Sbjct 96139 TGTTG 96143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1964046375172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |