Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq2382 389 2e-105 >seq2382 Length=181302 Score = 389 bits (430), Expect = 2e-105 Identities = 314/380 (83%), Gaps = 21/380 (6%) Strand=Plus/Plus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||||||||| || |||||||| ||||||||| ||||||||||||| | Sbjct 96226 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCTGGAGGATTTGGTGT 96285 Query 332 AAGGAGCAGCCCCATTTCGGCT---AAAGTGGAGATGGATCAAACAACAA---TGAAGAT 385 |||||||||||||||||| || ||||||||||||||||| ||||||| ||||||| Sbjct 96286 AAGGAGCAGCCCCATTTCATCTTCTAAAGTGGAGATGGATCAGACAACAACAGTGAAGAT 96345 Query 386 GGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTC 445 |||||||||||||||||||||||||||||||||||||||| | || |||||||| || || Sbjct 96346 GGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTATC 96405 Query 446 CTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGA 505 ||||||||||| ||||||||||||||||||||||||| | | | |||||||||||| | Sbjct 96406 TTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCGGATCCGGTACCGCA 96465 Query 506 GCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGA 565 | || ||||||| |||||||||| ||||||||||||||| ||||||||||| |||||| Sbjct 96466 GACGGTGAAGGTGGAATCTGAGGCCAAGAGGAGGCCTGAGGAATCTGAATT---TATGGA 96522 Query 566 GAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAG 625 |||||| | ||| || || ||| |||||||| | | |||| | || Sbjct 96523 GAGTAAGGAGGAGGT------------GAGGGAATCTTCTACTTTGGGAGCAGAAAATAG 96570 Query 626 TAGTATTCATGAGGTTGCTG 645 ||||| || ||||| ||||| Sbjct 96571 TAGTAATCGTGAGGATGCTG 96590 Score = 228 bits (252), Expect = 3e-57 Identities = 200/245 (82%), Gaps = 23/245 (9%) Strand=Plus/Plus Query 48 GGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT---CCTGAA 104 |||||||||||||| || |||||||||||||| |||||||||||||| || |||||| Sbjct 95906 GGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAACAACCCTGAA 95965 Query 105 GAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCATCATGGACC 157 ||||| |||||||||||||||||||| | | || |||| |||| || ||||| Sbjct 95966 GAGCTAGAGATTGAGATTGCTGAAGTGTTATACGGGTTGATGACTCAGTCA-CAAGGACC 96024 Query 158 TTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGTTAATAATAA 211 ||||| ||||| ||||| ||| |||||||| ||||||||||| |||| | Sbjct 96025 ATCCAAGAAAGA---AAGTGGAGGAGGACCAAATGATACAACAAGAGAAGTCAATA---A 96078 Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 96079 CAGATCCAGAGTTTCTTCTCCTGTTTCAAATTCTAACTCATCAGCTACTCCTTTATCTGC 96138 Query 272 TGCTG 276 || || Sbjct 96139 TGTTG 96143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1964046375172