Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 159 3e-34 >seq2 Length=96359640 Score = 159 bits (176), Expect = 3e-34 Identities = 374/561 (67%), Gaps = 5/561 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || || || |||||||| | || || |||||||| Sbjct 42516394 ATTTGGGAAATGTACAAAAAAGCCTTGGCCTCTTTCTGGACTGCTGAAGAAGTCGATTTA 42516335 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || || | | ||||||| || | ||||||| |||||||| | || Sbjct 42516334 TCTTCCGATAACCGTCACTGGGAAACCCTAACCCCCGGTGAAAGGCATTTCATCACTCAC 42516275 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || | || || |||||||| || ||||| ||||| || || || | | | ||| Sbjct 42516274 GTCCTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTC 42516215 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | | || || ||||| | ||||||||| ||||||||||||||| || || || || Sbjct 42516214 ATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 42516155 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385 || ||||||| |||||||||||| | || | || ||||||||| ||| | | || | Sbjct 42516154 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 42516095 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | |||| ||| || | ||||| || || || || ||| ||| | || Sbjct 42516094 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTG 42516036 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 ||| | ||||||| | || | | ||||||| || || ||| | |||||||| Sbjct 42516035 GGCACTACGTTGGATCGACGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCATTTGC 42515979 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || ||| | |||||| |||| || || || || ||||| || || || Sbjct 42515978 TTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAGCG 42515919 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | ||||| || | || ||| || ||||| || ||| | |||||||| |||| Sbjct 42515918 GGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGGGACGAGGGTTTGCA 42515859 Query 61626 TTGTGATTTTGCTGTTTTGCT 61646 |||||||| ||| |||||| Sbjct 42515858 CTGTGATTTCGCTTGTTTGCT 42515838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397387781680160