Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq7880 82.4 1e-13 seq6947 82.4 1e-13 seq43641 78.8 2e-12 seq48864 77.0 6e-12 seq28337 77.0 6e-12 seq48215 75.2 2e-11 seq21609 75.2 2e-11 seq2261 75.2 2e-11 seq27377 73.4 8e-11 >seq7880 Length=103709 Score = 82.4 bits (90), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 57288 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 57231 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||||| Sbjct 57230 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGG 57172 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 57171 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTA 57116 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 57115 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 57056 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 57055 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 56996 Query 311 CAATCAAAC 319 || || ||| Sbjct 56995 CACTCGAAC 56987 >seq6947 Length=298603 Score = 82.4 bits (90), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 298052 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 298109 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||||| Sbjct 298110 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGG 298168 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 298169 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTA 298224 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 298225 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 298284 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 298285 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 298344 Query 311 CAATCAAAC 319 || || ||| Sbjct 298345 CACTCGAAC 298353 >seq43641 Length=569 Score = 78.8 bits (86), Expect = 2e-12 Identities = 207/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 117 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 174 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || | |||||| Sbjct 175 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGATTAAGG 233 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| || || || ||||||||| ||| | ||||| | || || Sbjct 234 GAACCCA--CCGG-AGTCGTAGCGAAAGCGAGTCTTTATAGGGCAATT-GTCACTGCTTA 289 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 290 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 349 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 350 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 409 Query 311 CAATCAAAC 319 || |||||| Sbjct 410 CACTCAAAC 418 >seq48864 Length=221375 Score = 77.0 bits (84), Expect = 6e-12 Identities = 210/313 (67%), Gaps = 19/313 (6%) Strand=Plus/Minus Query 13 gggggTGAAATAGACCCTGAACCCGC--GCGCCTA-CAAGCGGTCGGAGCCGAGTGATTC 69 ||| |||||||||| | ||||| || || |||| ||| || |||||| || | | Sbjct 90617 GGGAGTGAAATAGAACATGAACACGTAAGCTCCTAGCAATAGGA-GGAGCC-AGGGCTC- 90561 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 | || |||||||| ||| | |||||| | || | | | | || || ||||||| Sbjct 90560 --TAACCGCGTGCCTGTTGAAGAATGAGACGGTGACTCA-TAGGCAGTGGCTTGGTTAAG 90504 Query 130 GG---CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTG 186 || || | || ||||| || |||||||| ||| | ||||| | || || Sbjct 90503 GGAACCTACCGG------AGCCGTAGCGAAAGCGATTCTTCATAGGGCAATT-GTCACTG 90451 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 ||||| |||| | |||||||| ||| || |||| ||||| |||| | Sbjct 90450 CTTTTAGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTAGAACTAA 90391 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 ||||||| |||||||| | |||||| | | ||||||| | | || |||||||||| Sbjct 90390 ATGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAA 90331 Query 307 AGGCCAATCAAAC 319 | |||| |||||| Sbjct 90330 ATGCCACTCAAAC 90318 >seq28337 Length=159889 Score = 77.0 bits (84), Expect = 6e-12 Identities = 95/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 208 GATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGAGGACCGAACCGGTAA 266 |||||| ||| ||||||||||||| || |||| | |||||||||||||| Sbjct 151651 GATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACATGCCTTGGAGGACCGAACCCACGT 151592 Query 267 ACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAA 326 | || | ||| | |||||||| | || ||||||||||||||||| ||| | ||| | Sbjct 151591 ATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATA 151532 Query 327 TAGCTCGTA 335 ||||| ||| Sbjct 151531 TAGCTGGTA 151523 >seq48215 Length=48602 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/143 (72%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 35948 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 36007 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 ||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 36008 AGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 36067 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 36068 AACCAAGATAGGATATAGCTGGT 36090 >seq21609 Length=120321 Score = 75.2 bits (82), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 9/147 (6%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 111 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 170 Query 252 GGACCGAACCGGTAAACGT---TGA-AAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||||||| |||| ||| ||| | |||||||| | || ||||||||||| Sbjct 171 GGACCGAACCC----ACGTATGTGACAAAATACGGGGATGACTTGTGGCTAGGGGTGAAA 226 Query 308 GGCCAATCAAACTGGGAAATAGCTCGT 334 |||||| ||| | ||| |||||| || Sbjct 227 GGCCAACCAAGATCGGATATAGCTGGT 253 >seq2261 Length=18389 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/143 (72%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| ||||||| || ||||||||||||| || ||| | |||| Sbjct 7117 GACACGAAACCAATCGATCTACTCATGAGCAGGTTGAAGAGAGCTCTAAGAGGCCTTGGA 7176 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 ||||| |||| | || | ||| ||| |||||||| || ||||||||||||||| Sbjct 7177 GGACCAAACCAACGTATGTGGCAAAATTTGGGGATGACTTATGGCTAGGGGTGAAAGGCC 7236 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 7237 AACCAAGATCGGATATAGCTGGT 7259 >seq27377 Length=193503 Score = 73.4 bits (80), Expect = 8e-11 Identities = 102/142 (72%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 194 ACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGAG 252 |||||||||| |||||| ||| |||||||| |||| | |||| || ||||| Sbjct 73655 ACGCGAAACCAATCGATCTAGCCATGAGCAGGTGGAAGAGAGATCTAACAGGTCTTGGAG 73596 Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312 |||||||| | | || | ||| | ||||| || | || |||||||||||||||| Sbjct 73595 AACCGAACCTACATATGTGGCAAAATACGGGGATGGCTTGTGGCTAGGGGTGAAAGGCCA 73536 Query 313 ATCAAACTGGGAAATAGCTCGT 334 | ||| | ||| |||||| || Sbjct 73535 ACCAAGATCGGATATAGCTGGT 73514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972283170816