Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq48356 131 9e-29 seq38971 131 9e-29 seq19117 131 9e-29 seq701 131 9e-29 seq174 131 9e-29 seq6251 127 1e-27 seq52684 125 4e-27 seq35724 125 4e-27 seq2922 125 4e-27 seq24493 123 1e-26 seq32888 116 2e-24 seq22871 109 3e-22 seq39531 107 1e-21 seq9222 91.5 8e-17 seq37919 82.4 4e-14 seq6480 80.6 1e-13 >seq48356 Length=183133 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 181746 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 181687 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 181686 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 181630 >seq38971 Length=633 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 347 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 288 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 287 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 231 >seq19117 Length=1307 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 88 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 147 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 148 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 204 >seq701 Length=17893 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 7332 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 7391 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 7392 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 7448 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 |||| |||| ||||||||||||| |||||||||| ||| |||| || |||||| | Sbjct 15782 GAACACAAACACTTTGATTTCTCATAAGGTGCCG-GCGAAGTCCTAAAAGCAACATCCGC 15840 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 15841 CGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 15898 >seq174 Length=26539 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 4118 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 4177 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 4178 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 4234 >seq6251 Length=9118 Score = 127 bits (140), Expect = 1e-27 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 7652 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 7711 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||| Sbjct 7712 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTC 7766 >seq52684 Length=22553 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||| |||||| |||||||||| ||||| || |||||| || Sbjct 22026 GAACCCAAAAACTTTGCTTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 21967 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 21966 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 21910 >seq35724 Length=684 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 396 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 455 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||| ||||||| Sbjct 456 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCATCTTCGA 512 >seq2922 Length=15139 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 7245 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 7304 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| | |||| |||||||||||||||||||||| Sbjct 7305 GATCCCTGGTCGGCATCGTTTATGGTTGAAACTAGGACGGTATCTGATCGTCTTCGA 7361 >seq24493 Length=416523 Score = 123 bits (136), Expect = 1e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| ||||||||||| ||||| || |||||| ||| Sbjct 131606 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGACGGAGTCCTAAAAGCAACATCCGCCG 131665 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||| |||| ||||| |||| |||||| || ||||| ||||||||||||| Sbjct 131666 ATCCCTAGTCAGCATCGTTTATGGTTGAGACTAGGATGGTATGTGATCGTCTTCGA 131721 >seq32888 Length=168383 Score = 116 bits (128), Expect = 2e-24 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| || |||||| | Sbjct 57685 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 57743 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| || ||||| ||||| |||| |||||| || ||||||| ||||||||||| Sbjct 57744 CGATCCCTGGTTGGCATCGTTTATGGTTGAGACTAGGATGGTATCTCATCGTCTTCGA 57801 >seq22871 Length=1061 Score = 109 bits (120), Expect = 3e-22 Identities = 97/120 (81%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||| ||||||||| ||||||| | | |||| | | || | ||||| Sbjct 1036 GAACCCAAAGACTCTGATTTCTCTCAAGGTGCTGGCGGGGTCA---TCAAAAGAACGCCC 980 Query 61 G---ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||||| |||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 979 GCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 920 >seq39531 Length=61116 Score = 107 bits (118), Expect = 1e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| |||||||||| ||| || || | | ||||| | Sbjct 34461 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTTCTGAAAGCT-ACATCCAC 34519 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| || |||||||| ||||| |||| |||||| |||||||| ||||||| || || Sbjct 34520 CGATCACTGGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATTTGATCGTTTTTGA 34577 >seq9222 Length=309190 Score = 91.5 bits (100), Expect = 8e-17 Identities = 95/120 (79%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTC--AAAATGATAACATCG 57 |||| |||| ||||||||||| |||||||||| |||| ||| |||| || |||| Sbjct 214534 GAACTCAAAACCTTTGATTTCTTATAAGGTGCCG-GCGAAGTCCTAAAAGCAT--CATCC 214478 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| | ||||||| ||||| | || |||||| ||||||||||||||||||| || Sbjct 214477 GTCGATCCTTGATCGGCATCGTTTATGATTGAGACTAGGACGGTATCTGATCGTCTTAGA 214418 >seq37919 Length=648 Score = 82.4 bits (90), Expect = 4e-14 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 53 CATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTC 112 |||| ||||||||| |||||||| ||||| |||| |||||| |||||||||||||| || Sbjct 648 CATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCATC 589 Query 113 TTCGA 117 ||||| Sbjct 588 TTCGA 584 >seq6480 Length=142144 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| || |||||||||| |||| | | ||||| || |||||| | Sbjct 33317 GAACCCAAAAACATTGATTTCTCTTAAGATATTGGCGGAGTCCTAAAAGCAACATCAAAC 33258 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||| ||| |||||||||||||||| ||| ||||||||| ||||| || Sbjct 33257 GATCCTTGATCGACATTGTTTACGGTTAAGACTCAGACAGTATCTGATTGTCTTTGA 33201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278261335920