Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq51741 358 3e-96 seq50660 105 3e-20 >seq51741 Length=269797 Score = 358 bits (396), Expect = 3e-96 Identities = 273/325 (84%), Gaps = 21/325 (6%) Strand=Plus/Plus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 ||||||||||||||||| || |||||||| ||||||||| ||||||||||||| ||||| Sbjct 57599 GCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCTGGAGGATTTGGTGTAAGG 57658 Query 336 AGCAGCCCCATTTCGGCT---------------AAAGTGGAGATGGATCA---AACAACA 377 |||||||||||||| || ||||||||||||||||| ||||||| Sbjct 57659 AGCAGCCCCATTTCATCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAACAACA 57718 Query 378 ATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAAT 437 |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| Sbjct 57719 ATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAAT 57778 Query 438 GGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCG 497 || || || ||||||||||| ||||||| ||||||||||||||||| ||| |||||||| Sbjct 57779 GGTGTATCTTTATATGATTTAAGTGCTTCCGTACAAAGTTTGCCGGTTGTATCAGATCCG 57838 Query 498 GTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTT 557 ||||| ||| |||||||||| ||| ||||| |||||||||||| || ||||||||||| Sbjct 57839 GTACCTGAGTCGATGAAGGTGGAAACTGAGACCAAGAGGAGGCCGGAGGAATCTGAATT- 57897 Query 558 ACTATGGAGAGTAAAGTGGAAGTGA 582 ||| |||||||| | ||| |||| Sbjct 57898 --TATAGAGAGTAAGGAGGAGGTGA 57920 Score = 226 bits (250), Expect = 1e-56 Identities = 202/250 (81%), Gaps = 20/250 (8%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||||||||| || |||||||||||||| |||||||||||||| || Sbjct 57260 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAAC 57319 Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148 ||||||||||| ||||||||||||||||| || | | || |||| |||| Sbjct 57320 AACCCTGAAGAGCTAGAGATTGAGATTGCTGAGGTGTTATACGGGTTGATGACTCAGTCA 57379 Query 149 TCATGGACCTTCCAAAAAAGATACA-----AGTGTGAC-AAATGATAATACAAGAGAAGT 202 || ||||||||||| ||||| | ||| ||| |||||||| || |||||||| Sbjct 57380 -CAAGGACCTTCCAAGAAAGAAAGTGGAGGAGTAGGACCAAATGATACAACTAGAGAAGT 57438 Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262 |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 57439 CAATA---ACAGATCCAGAGTTTCATCTCCTGTTTCAAATTCTAACTCATCAGCTACTCC 57495 Query 263 TTTATCTGCT 272 |||||||||| Sbjct 57496 TTTATCTGCT 57505 >seq50660 Length=69073 Score = 105 bits (116), Expect = 3e-20 Identities = 148/206 (72%), Gaps = 19/206 (9%) Strand=Plus/Minus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||| ||| || ||||||||| |||| ||| |||| |||||| | Sbjct 58351 TGCAGCTCCAAAGAGAAAATTACCGAGGCAAGTATCGGAATATCCCGGAGAGTTTGGTGT 58292 Query 332 AAGGAGC-AGCCCCATTTCG----------GCTAAAGTGGAGATGGATCAAACAACAATG 380 | | ||| ||| |||||| ||||||||||||| || | |||| |||| Sbjct 58291 ATGTAGCTTACCCTATTTCGTCTGACTACAGCTAAAGTGGAGAGCAATGATACAATAATG 58232 Query 381 AAGATGGAG-GTTTCTTCTCCTAATTTGGAGAAGACCCCACA-ATC------TACAGCGG 432 ||||||||| |||||||||| || |||| |||||| ||| | ||| ||| | Sbjct 58231 AAGATGGAGATTTTCTTCTCCCAAGTTGGTGAAGACACCAAATATCTAATAATACTACTT 58172 Query 433 AAAATGGAGTTTCCTTATATGATTTG 458 ||||||| | |||||||| |||||| Sbjct 58171 AAAATGGTGCCTCCTTATACGATTTG 58146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1963723520464