Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq11797 84.2 2e-14 seq37277 73.4 4e-11 seq29310 73.4 4e-11 >seq11797 Length=185442 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 55605 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCGCTG 55546 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||||||||||| Sbjct 55545 CTCGACGAGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCATTGCACT 55500 >seq37277 Length=127407 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||||||||| || | ||| |||||||||| | || ||||| |||| Sbjct 18486 TTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCATCCCTGT 18545 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || ||| ||| |||||| ||| |||| ||||||| Sbjct 18546 TCGACGGGTGGGTCTTGCAATCAAGCTCCCTTCTGCCTTTGCACT 18590 >seq29310 Length=831 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||||||||| || | ||| |||||||||| | || ||||| |||| Sbjct 62 TTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCATCCCTGT 121 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || ||| ||| |||||| ||| |||| ||||||| Sbjct 122 TCGACGGGTGGGTCTTGCAATCAAGCTCCCTTCTGCCTTTGCACT 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473356248736