Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq21359 111 3e-22 seq45109 107 3e-21 seq31417 107 3e-21 seq6251 107 3e-21 seq701 107 3e-21 seq48394 102 1e-19 seq11416 102 1e-19 seq5731 102 1e-19 seq5405 98.7 2e-18 seq1282 75.2 2e-11 >seq21359 Length=1151 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 417 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 474 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| ||||||||||| |||||||||||||||||||||||| || | Sbjct 475 GGCGCGAAGCTACCATGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 534 Query 121 GAA 123 ||| Sbjct 535 GAA 537 >seq45109 Length=545 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 395 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 452 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 453 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 512 Query 121 GAA 123 ||| Sbjct 513 GAA 515 >seq31417 Length=299300 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 33934 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 33877 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 33876 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 33817 Query 121 GAA 123 ||| Sbjct 33816 GAA 33814 >seq6251 Length=9118 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 5001 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 4944 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 4943 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 4884 Query 121 GAA 123 ||| Sbjct 4883 GAA 4881 >seq701 Length=17893 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 12605 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 12548 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 12547 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 12488 Query 121 GAA 123 ||| Sbjct 12487 GAA 12485 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| |||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 4198 GTACGAGATGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 4141 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 4140 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 4081 Query 121 GAA 123 ||| Sbjct 4080 GAA 4078 >seq48394 Length=87945 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 22369 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 22312 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||| ||||||||| || | Sbjct 22311 GGCGCGAAGCTACCGTGAGCTGGATTATGACTGAACGCCTCTAACTCAGAATCCGGGCTA 22252 Query 121 GAA 123 ||| Sbjct 22251 GAA 22249 >seq11416 Length=2298 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| ||| |||||| | ||| || ||| || |||| Sbjct 1840 GTACGAGAGGAACCGTTGA-TTC-GAACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 1783 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 1782 GGCACGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1723 Query 121 GAA 123 ||| Sbjct 1722 GAA 1720 >seq5731 Length=12361 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 7158 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 7215 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||||||||||||||||||||| || | Sbjct 7216 GGCGCGAAGCTACCGTGCGCTGGATTATGAATGAACGCCTCTAAGTCAGAATCCGGGCTA 7275 Query 121 GAA 123 ||| Sbjct 7276 GAA 7278 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | |||| || | ||| || ||| || |||| Sbjct 4268 GTACGAGAGGAACCGTTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 4325 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||| |||||| ||||||||||||||||||||||| || | Sbjct 4326 GGCGCGAAGCTACCGTGCGCTGTATTATGAATGAACGCCTCTAAGTCAGAATCCGGGCTA 4385 Query 121 GAA 123 ||| Sbjct 4386 GAA 4388 >seq5405 Length=9953 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 621 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 678 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||| || ||||||||||||||||||||| || | Sbjct 679 GGCGCGAAGCTACCGTGCACTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCTA 738 Query 121 GAA 123 ||| Sbjct 739 GAA 741 >seq1282 Length=15820 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/105 (77%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || ||| | | ||||||| | ||| || ||| || | || Sbjct 12501 TACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCTTTG 12558 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGT 106 ||||||||||| | ||||||||||| |||||||||||||||| Sbjct 12559 GTGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGT 12603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818778376192