Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 168 5e-37
seq38302 159 3e-34
>seq44697
Length=182102
Score = 168 bits (186), Expect = 5e-37
Identities = 376/561 (67%), Gaps = 5/561 (1%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|||||| ||||||||||| || ||| || |||||||| | || || |||||||||
Sbjct 113821 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCTGAAGAAGTCGATTTG 113762
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206
|| || | | ||||||| || | ||||||| |||||||| | ||
Sbjct 113761 TCTTCTGATAACCGTCACTGGGAAACCCTAACACCCGGTGAAAGGCATTTCATCACTCAC 113702
Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266
|| | || || |||||||| || ||||| ||||| || || || | | | |||
Sbjct 113701 GTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTC 113642
Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326
| | || || ||||| | ||||| ||| ||||||||||||||| || || || ||
Sbjct 113641 ATGAAAGAAGTCCAAGTTGCCGAGGCCCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 113582
Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385
|| ||||||| |||||||||||| | || | || ||||||||| ||| | | || |
Sbjct 113581 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 113522
Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445
| | | |||| ||| || | ||||| || || || || ||| ||| | ||
Sbjct 113521 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTG 113463
Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505
|||| | ||||||| | || | | ||||||| || || ||| | ||||||||
Sbjct 113462 GGCCCTACGTTGGATCGACGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCATTTGC 113406
Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565
|| || ||| | |||||| ||| ||| || || || ||||| || || ||
Sbjct 113405 TTGTGTGGAAGGTATTTTTTTCTCCGGAAGCTTTTGTGCTATATTCTGGTTAAAAAAGCG 113346
Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625
|| | ||||| || | |||||| || ||||| || || | ||||| || ||||
Sbjct 113345 GGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTTAATTTCTAGGGACGAAGGTTTGCA 113286
Query 61626 TTGTGATTTTGCTGTTTTGCT 61646
|||||||||||| ||||||
Sbjct 113285 CTGTGATTTTGCTTGTTTGCT 113265
>seq38302
Length=59671
Score = 159 bits (176), Expect = 3e-34
Identities = 374/561 (67%), Gaps = 5/561 (1%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|||||| ||||||||||| || ||| || |||||||| | ||| || ||||||||
Sbjct 23641 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCGGAAGAAGTCGATTTA 23582
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206
|| || | | ||||||| || | ||||||| |||||||| | ||
Sbjct 23581 TCTTCCGATACCCGTCACTGGGAAACCCTAACACCCGGTGAAAGGCATTTCATCACTCAC 23522
Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266
|| | || || |||||||| || ||||| ||||| || || || | | |||
Sbjct 23521 GTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGGAGGTTC 23462
Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326
| | || || ||||| | ||||| ||| ||||||||||||||| || || || ||
Sbjct 23461 ATGAAAGAAGTCCAAGTTGCCGAGGCCCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 23402
Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385
|| ||||||| |||||||||||| | || | || ||||||||| ||| | | || |
Sbjct 23401 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 23342
Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445
| | | |||| ||| || | ||||| || || || || ||| ||| | ||
Sbjct 23341 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATTCCCTGTGTTGAGAAGAAGGCGAAGTG 23283
Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505
|||| | ||||||| | || | | ||||||| || || ||| | |||||| |
Sbjct 23282 GGCCCTACGTTGGATCGACGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCATTTTC 23226
Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565
|| || ||| | |||||| |||| ||| || || || ||||| || || ||
Sbjct 23225 TTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTTTGTGCTATATTCTGGTTAAAAAAGCG 23166
Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625
|| | ||||| || | || ||| || ||||| || ||| | ||||| || ||||
Sbjct 23165 GGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGGGACGAAGGTTTGCA 23106
Query 61626 TTGTGATTTTGCTGTTTTGCT 61646
|||||||| ||| ||||||
Sbjct 23105 CTGTGATTTCGCTTGTTTGCT 23085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397310575713920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |