Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq44697 168 5e-37 seq38302 159 3e-34 >seq44697 Length=182102 Score = 168 bits (186), Expect = 5e-37 Identities = 376/561 (67%), Gaps = 5/561 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || ||| || |||||||| | || || ||||||||| Sbjct 113821 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCTGAAGAAGTCGATTTG 113762 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || || | | ||||||| || | ||||||| |||||||| | || Sbjct 113761 TCTTCTGATAACCGTCACTGGGAAACCCTAACACCCGGTGAAAGGCATTTCATCACTCAC 113702 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || | || || |||||||| || ||||| ||||| || || || | | | ||| Sbjct 113701 GTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTC 113642 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | | || || ||||| | ||||| ||| ||||||||||||||| || || || || Sbjct 113641 ATGAAAGAAGTCCAAGTTGCCGAGGCCCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 113582 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385 || ||||||| |||||||||||| | || | || ||||||||| ||| | | || | Sbjct 113581 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 113522 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | |||| ||| || | ||||| || || || || ||| ||| | || Sbjct 113521 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTG 113463 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 |||| | ||||||| | || | | ||||||| || || ||| | |||||||| Sbjct 113462 GGCCCTACGTTGGATCGACGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCATTTGC 113406 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || ||| | |||||| ||| ||| || || || ||||| || || || Sbjct 113405 TTGTGTGGAAGGTATTTTTTTCTCCGGAAGCTTTTGTGCTATATTCTGGTTAAAAAAGCG 113346 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | ||||| || | |||||| || ||||| || || | ||||| || |||| Sbjct 113345 GGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTTAATTTCTAGGGACGAAGGTTTGCA 113286 Query 61626 TTGTGATTTTGCTGTTTTGCT 61646 |||||||||||| |||||| Sbjct 113285 CTGTGATTTTGCTTGTTTGCT 113265 >seq38302 Length=59671 Score = 159 bits (176), Expect = 3e-34 Identities = 374/561 (67%), Gaps = 5/561 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || ||| || |||||||| | ||| || |||||||| Sbjct 23641 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCGGAAGAAGTCGATTTA 23582 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || || | | ||||||| || | ||||||| |||||||| | || Sbjct 23581 TCTTCCGATACCCGTCACTGGGAAACCCTAACACCCGGTGAAAGGCATTTCATCACTCAC 23522 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || | || || |||||||| || ||||| ||||| || || || | | ||| Sbjct 23521 GTCCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGGAGGTTC 23462 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | | || || ||||| | ||||| ||| ||||||||||||||| || || || || Sbjct 23461 ATGAAAGAAGTCCAAGTTGCCGAGGCCCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 23402 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385 || ||||||| |||||||||||| | || | || ||||||||| ||| | | || | Sbjct 23401 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 23342 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | |||| ||| || | ||||| || || || || ||| ||| | || Sbjct 23341 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATTCCCTGTGTTGAGAAGAAGGCGAAGTG 23283 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 |||| | ||||||| | || | | ||||||| || || ||| | |||||| | Sbjct 23282 GGCCCTACGTTGGATCGACGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCATTTTC 23226 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || ||| | |||||| |||| ||| || || || ||||| || || || Sbjct 23225 TTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTTTGTGCTATATTCTGGTTAAAAAAGCG 23166 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | ||||| || | || ||| || ||||| || ||| | ||||| || |||| Sbjct 23165 GGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGGGACGAAGGTTTGCA 23106 Query 61626 TTGTGATTTTGCTGTTTTGCT 61646 |||||||| ||| |||||| Sbjct 23105 CTGTGATTTCGCTTGTTTGCT 23085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397310575713920