Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq135667 82.4 1e-13 seq125619 82.4 1e-13 seq65906 82.4 1e-13 seq319815 78.8 2e-12 seq241486 75.2 2e-11 seq20449 73.4 8e-11 seq19824 73.4 8e-11 >seq135667 Length=1735 Score = 82.4 bits (90), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 489 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 432 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||||| Sbjct 431 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGG 373 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 372 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTA 317 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 316 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 257 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 256 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 197 Query 311 CAATCAAAC 319 || || ||| Sbjct 196 CACTCGAAC 188 >seq125619 Length=15746 Score = 82.4 bits (90), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 6533 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 6590 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||||| Sbjct 6591 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGG 6649 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 6650 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTA 6705 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 6706 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 6765 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 6766 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 6825 Query 311 CAATCAAAC 319 || || ||| Sbjct 6826 CACTCGAAC 6834 >seq65906 Length=57652 Score = 82.4 bits (90), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-CG 70 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 19822 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCAGGGCT 19879 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||||| Sbjct 19880 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGG 19938 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 19939 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTA 19994 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 19995 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 20054 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 20055 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 20114 Query 311 CAATCAAAC 319 || || ||| Sbjct 20115 CACTCGAAC 20123 >seq319815 Length=8707 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 125 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 184 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 185 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 244 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 245 AACCAAGATCGGATATAGCTGGT 267 >seq241486 Length=8976 Score = 75.2 bits (82), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 1449 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAAAGCTCTAACAGGACTTGGA 1390 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || ||||| | |||||||| | || || |||||||||||| Sbjct 1389 GGACCGAACCCACGTATGTGGAAAAATACGGGGATGACTTGTGGCTAAGGGTGAAAGGCC 1330 Query 312 AATCAAACTGGGAAATAG 329 || ||| | ||| |||| Sbjct 1329 AACCAAGATCGGATATAG 1312 Score = 75.2 bits (82), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 5450 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAAAGCTCTAACAGGACTTGGA 5391 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || ||||| | |||||||| | || || |||||||||||| Sbjct 5390 GGACCGAACCCACGTATGTGGAAAAATACGGGGATGACTTGTGGCTAAGGGTGAAAGGCC 5331 Query 312 AATCAAACTGGGAAATAG 329 || ||| | ||| |||| Sbjct 5330 AACCAAGATCGGATATAG 5313 >seq20449 Length=328146 Score = 73.4 bits (80), Expect = 8e-11 Identities = 168/248 (68%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 91371 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 91429 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 91430 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 91485 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 91486 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 91545 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 91546 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 91605 Query 312 AATCAAAC 319 | || ||| Sbjct 91606 ACTCGAAC 91613 >seq19824 Length=166985 Score = 73.4 bits (80), Expect = 8e-11 Identities = 168/248 (68%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 46491 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 46549 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 46550 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 46605 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 46606 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 46665 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 46666 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 46725 Query 312 AATCAAAC 319 | || ||| Sbjct 46726 ACTCGAAC 46733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 963756783104