Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq93445 82.4 5e-14 seq208536 78.8 6e-13 seq175671 75.2 7e-12 seq119669 75.2 7e-12 seq29223 75.2 7e-12 seq122202 73.4 2e-11 >seq93445 Length=407 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 258 CTCACTAAACAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 201 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 200 TAAT-CAATGCGAG 188 >seq208536 Length=4779 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 4233 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 4290 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 4291 TAAT-CAATGCGAG 4303 >seq175671 Length=46863 Score = 75.2 bits (82), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTA--AGCGACGGGCGGGGTGTACAA 96 |||||| ||| ||||| |||| || ||||||| | | |||||||||| |||||||| Sbjct 17277 TCCGAATGTT-TCACTGGATCATT-CAATCGGTAGGAGCANCGACGGGCGGTGTGTACAA 17220 Query 97 AGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| | |||||| |||| Sbjct 17219 AGGGCAGGGACGTAGT-CAACGCGAGCT 17193 >seq119669 Length=305106 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 163956 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 164013 Query 122 GCT 124 ||| Sbjct 164014 GCT 164016 >seq29223 Length=4313 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1983 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1926 Query 122 GCT 124 ||| Sbjct 1925 GCT 1923 >seq122202 Length=26478 Score = 73.4 bits (80), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| || |||||| |||| || |||||| ||||||||| ||| |||||||||| Sbjct 15936 TCCGAACATT-TCACTAGATCATT-CAAACGGTAG-AAGCGACGGACGGTGTGTACAAAG 15992 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| | |||||| |||| Sbjct 15993 GGCAGGGACGTAGT-CAACGCGAGCT 16017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300083951240