Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 150 1e-31
>seq118536
Length=58152
Score = 150 bits (166), Expect = 1e-31
Identities = 372/561 (66%), Gaps = 5/561 (1%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|||||| ||||||||||| || ||| || |||||||| | || || ||||||||
Sbjct 24885 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCTGAAGAAGTCGATTTA 24944
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206
|| || | | ||||||| || | ||||||| |||||||| | ||
Sbjct 24945 TCTTCCGATACCCGTCACTGGGAAACCCTAACCCCCGGTGAAAGGCATTTCATCACTCAC 25004
Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266
|| | || || || ||||| || ||||| ||||| || || || | | | |||
Sbjct 25005 GTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTC 25064
Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326
| | || || ||||| | ||||||||| ||||||||||||||| || || || ||
Sbjct 25065 ATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 25124
Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385
|| ||||||| |||||||||||| | || | || ||||||||| ||| | | || |
Sbjct 25125 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 25184
Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445
| | | |||| ||| || | ||||| || || || || ||| ||| | ||
Sbjct 25185 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTG 25243
Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505
|||| | ||||||| || | | ||||||| || || ||| | || |||||
Sbjct 25244 GGCCCTACGTTGGATCGATGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCCTTTGC 25300
Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565
|| || ||| | |||||| |||| || || || || ||||| || || ||
Sbjct 25301 TTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAGCG 25360
Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625
|| | ||||| || | || ||| || ||||| || ||| | ||||| || ||||
Sbjct 25361 GGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGGGACGAAGGTTTGCA 25420
Query 61626 TTGTGATTTTGCTGTTTTGCT 61646
|||||||| ||| ||||||
Sbjct 25421 CTGTGATTTCGCTTGTTTGCT 25441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396337675879520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |