Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq118536 150 1e-31 >seq118536 Length=58152 Score = 150 bits (166), Expect = 1e-31 Identities = 372/561 (66%), Gaps = 5/561 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || ||| || |||||||| | || || |||||||| Sbjct 24885 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCTGAAGAAGTCGATTTA 24944 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || || | | ||||||| || | ||||||| |||||||| | || Sbjct 24945 TCTTCCGATACCCGTCACTGGGAAACCCTAACCCCCGGTGAAAGGCATTTCATCACTCAC 25004 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || | || || || ||||| || ||||| ||||| || || || | | | ||| Sbjct 25005 GTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTC 25064 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | | || || ||||| | ||||||||| ||||||||||||||| || || || || Sbjct 25065 ATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 25124 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385 || ||||||| |||||||||||| | || | || ||||||||| ||| | | || | Sbjct 25125 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 25184 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | |||| ||| || | ||||| || || || || ||| ||| | || Sbjct 25185 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTG 25243 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 |||| | ||||||| || | | ||||||| || || ||| | || ||||| Sbjct 25244 GGCCCTACGTTGGATCGATGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCCTTTGC 25300 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || ||| | |||||| |||| || || || || ||||| || || || Sbjct 25301 TTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAGCG 25360 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | ||||| || | || ||| || ||||| || ||| | ||||| || |||| Sbjct 25361 GGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGGGACGAAGGTTTGCA 25420 Query 61626 TTGTGATTTTGCTGTTTTGCT 61646 |||||||| ||| |||||| Sbjct 25421 CTGTGATTTCGCTTGTTTGCT 25441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396337675879520