Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= AAMG01001198.1 Length=123 Score E Sequences producing significant alignments: (Bits) Value seq51665 156 3e-36 seq31251 156 3e-36 seq4630 150 1e-34 >seq51665 Length=26289 Score = 156 bits (172), Expect = 3e-36 Identities = 109/123 (89%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 1 TGGAGGTTTCTTCTCCTAGTTTGGACAAGACCCCACAATCTACAGCGGAAAATGGAGTTT 60 |||||||||||||||||| |||||| ||||||||||||||| | || |||||||| || | Sbjct 11876 TGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTAT 11935 Query 61 CCTTATATGGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCG 120 | |||||| ||||| ||||||||||||||||||||||||| | | |||||||||||||| Sbjct 11936 CTTTATAT-GATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCAGATCCGGTACCG 11994 Query 121 GAG 123 ||| Sbjct 11995 GAG 11997 >seq31251 Length=226614 Score = 156 bits (172), Expect = 3e-36 Identities = 109/123 (89%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 1 TGGAGGTTTCTTCTCCTAGTTTGGACAAGACCCCACAATCTACAGCGGAAAATGGAGTTT 60 |||||||||||||||||| |||||| ||||||||||||||| | || |||||||| || | Sbjct 219559 TGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTAT 219500 Query 61 CCTTATATGGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCG 120 | |||||| ||||| ||||||||||||||||||||||||| | | |||||||||||||| Sbjct 219499 CTTTATAT-GATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCAGATCCGGTACCG 219441 Query 121 GAG 123 ||| Sbjct 219440 GAG 219438 >seq4630 Length=5021 Score = 150 bits (166), Expect = 1e-34 Identities = 108/123 (88%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 1 TGGAGGTTTCTTCTCCTAGTTTGGACAAGACCCCACAATCTACAGCGGAAAATGGAGTTT 60 |||||||||||||||||| |||||| ||||||||||||||| | || |||||||| || | Sbjct 3923 TGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTAT 3982 Query 61 CCTTATATGGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCG 120 | |||||| ||||| ||||||||||||||||||||||||| | | | |||||||||||| Sbjct 3983 CTTTATAT-GATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCGGATCCGGTACCG 4041 Query 121 GAG 123 ||| Sbjct 4042 GAG 4044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297130590870