Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29]
168,247 sequences; 3,643,471,356 total letters
Query= AAMG01001210.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
seq4630 374 3e-101
seq51665 370 4e-100
seq31251 370 4e-100
seq166171 96.9 1e-17
seq10678 80.6 1e-12
>seq4630
Length=5021
Score = 374 bits (414), Expect = 3e-101
Identities = 317/392 (81%), Gaps = 36/392 (9%)
Strand=Plus/Plus
Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331
||| ||||||||||||||||| || |||||||| ||||||||| |||||||||||||
Sbjct 3792 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCTGGAGGATTTGGTGC 3851
Query 332 AAGGAGCAGCCCCATTTCGGCT---------------AAAGTGGAGATGGATCA---AAC 373
|||||||||||||||||| || ||||||||||||||||| |||
Sbjct 3852 AAGGAGCAGCCCCATTTCATCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAAC 3911
Query 374 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGA 433
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 3912 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGA 3971
Query 434 AAATGGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGA 493
|||||| || || ||||||||||| ||||||||||||||||||||||||| | | | ||
Sbjct 3972 AAATGGTGTATCTTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCGGA 4031
Query 494 TCCGGTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGA 553
||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 4032 TCCGGTACCGGAGACGATGAAGGTGGAATCTGAGGCCAAGAGGAGGCCTGAGGAATCTGA 4091
Query 554 ATTTACTATGGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGT 613
||| |||||||||||| | ||| || || ||| |||||||| |||
Sbjct 4092 ATT---TATGGAGAGTAAGGAGGAGGT------------GAGGGAGTCTTCTACT-TTG- 4134
Query 614 TGCAGCGGAGAGTAGTATTCATGAGGTTGCTG 645
| ||| || | ||||| || ||||| |||||
Sbjct 4135 -GGAGCAGAAAATAGTAATCGTGAGGATGCTG 4165
Score = 228 bits (252), Expect = 3e-57
Identities = 205/254 (81%), Gaps = 20/254 (8%)
Strand=Plus/Plus
Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98
||||| | |||||||||||||| || |||||||||||||| |||||| ||||||| ||
Sbjct 3459 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTGCTTCATCCAAC 3518
Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148
||||||||||| |||||||||||||||||||| | | || |||| ||||
Sbjct 3519 AACCCTGAAGAGCTAGAGATTGAGATTGCTGAAGTGTTATACGGGTTGATGACCCAGTCA 3578
Query 149 TCATGGACCTTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGT 202
|| ||||||||||| ||||| | ||| ||| |||||||| |||||||||||
Sbjct 3579 -CAAGGACCTTCCAAGAAAGAAAGTGGTGGAGGAGGACGAAATGATACAACAAGAGAAGT 3637
Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262
|||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 3638 CAATA---ACAGATCCAGAGTTTCTTCTCCTGTTTCAAATTCTAACTCATCAGCTACTCC 3694
Query 263 TTTATCTGCTGCTG 276
||||||||||| ||
Sbjct 3695 TTTATCTGCTGTTG 3708
>seq51665
Length=26289
Score = 370 bits (410), Expect = 4e-100
Identities = 316/392 (81%), Gaps = 36/392 (9%)
Strand=Plus/Plus
Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331
||| ||||||||||||||||| || |||||||| ||||||||| ||||||||||||
Sbjct 11745 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCCGGAGGATTTGGTGC 11804
Query 332 AAGGAGCAGCCCCATTTCGGC---------------TAAAGTGGAGATGGATCA---AAC 373
||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 11805 AAGGAGCAGCCCCATTTCGTCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAAC 11864
Query 374 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGA 433
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 11865 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGA 11924
Query 434 AAATGGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGA 493
|||||| || || ||||||||||| ||||||||||||||||||||||||| | | ||||
Sbjct 11925 AAATGGTGTATCTTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCAGA 11984
Query 494 TCCGGTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGA 553
||||||||||||| | |||||||| ||||| |||| ||||||||||||||| ||||||||
Sbjct 11985 TCCGGTACCGGAGACTATGAAGGTGGAATCCGAGGCCAAGAGGAGGCCTGAGGAATCTGA 12044
Query 554 ATTTACTATGGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGT 613
||| |||||||||||| | ||| || || ||| |||||||| |||
Sbjct 12045 ATT---TATGGAGAGTAAGGAGGAGGT------------GAGGGAATCTTCTACT-TTG- 12087
Query 614 TGCAGCGGAGAGTAGTATTCATGAGGTTGCTG 645
| ||| || | ||||| || ||||| |||||
Sbjct 12088 -GGAGCAGAAAATAGTAATCGTGAGGATGCTG 12118
Score = 226 bits (250), Expect = 1e-56
Identities = 205/254 (81%), Gaps = 23/254 (9%)
Strand=Plus/Plus
Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98
||||| | |||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 11413 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAAC 11472
Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148
||||||||||| |||||||| ||||||||||| | | || |||| ||||
Sbjct 11473 AACCCTGAAGAGCTAGAGATTGAAATTGCTGAAGTGTTATACGGGTTGATGACTCAGTCA 11532
Query 149 TCATGGACCTTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGT 202
|| ||||||||||| ||||| ||||| ||| |||||||| || ||||||||
Sbjct 11533 -CAAGGACCTTCCAAGAAAGA---AAGTGGAGGAGGACCAAATGATACGACTAGAGAAGT 11588
Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 11589 CAATA---ACAGATCCAGAGTTTCATCTCCTGTTTCAAATTCTAACTCGTCAGCTACTCC 11645
Query 263 TTTATCTGCTGCTG 276
||||||||||| ||
Sbjct 11646 TTTATCTGCTGTTG 11659
>seq31251
Length=226614
Score = 370 bits (410), Expect = 4e-100
Identities = 316/392 (81%), Gaps = 36/392 (9%)
Strand=Plus/Minus
Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331
||| ||||||||||||||||| || |||||||| ||||||||| ||||||||||||
Sbjct 219690 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCCGGAGGATTTGGTGC 219631
Query 332 AAGGAGCAGCCCCATTTCGGC---------------TAAAGTGGAGATGGATCA---AAC 373
||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 219630 AAGGAGCAGCCCCATTTCGTCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAAC 219571
Query 374 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGA 433
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 219570 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGA 219511
Query 434 AAATGGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGA 493
|||||| || || ||||||||||| ||||||||||||||||||||||||| | | ||||
Sbjct 219510 AAATGGTGTATCTTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCAGA 219451
Query 494 TCCGGTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGA 553
||||||||||||| | |||||||| ||||| |||| ||||||||||||||| ||||||||
Sbjct 219450 TCCGGTACCGGAGACTATGAAGGTGGAATCCGAGGCCAAGAGGAGGCCTGAGGAATCTGA 219391
Query 554 ATTTACTATGGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGT 613
||| |||||||||||| | ||| || || ||| |||||||| |||
Sbjct 219390 ATT---TATGGAGAGTAAGGAGGAGGT------------GAGGGAATCTTCTACT-TTG- 219348
Query 614 TGCAGCGGAGAGTAGTATTCATGAGGTTGCTG 645
| ||| || | ||||| || ||||| |||||
Sbjct 219347 -GGAGCAGAAAATAGTAATCGTGAGGATGCTG 219317
Score = 226 bits (250), Expect = 1e-56
Identities = 205/254 (81%), Gaps = 23/254 (9%)
Strand=Plus/Minus
Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98
||||| | |||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 220022 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAAC 219963
Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148
||||||||||| |||||||| ||||||||||| | | || |||| ||||
Sbjct 219962 AACCCTGAAGAGCTAGAGATTGAAATTGCTGAAGTGTTATACGGGTTGATGACTCAGTCA 219903
Query 149 TCATGGACCTTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGT 202
|| ||||||||||| ||||| ||||| ||| |||||||| || ||||||||
Sbjct 219902 -CAAGGACCTTCCAAGAAAGA---AAGTGGAGGAGGACCAAATGATACGACTAGAGAAGT 219847
Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262
||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 219846 CAATAA---CAGATCCAGAGTTTCATCTCCTGTTTCAAATTCTAACTCGTCAGCTACTCC 219790
Query 263 TTTATCTGCTGCTG 276
||||||||||| ||
Sbjct 219789 TTTATCTGCTGTTG 219776
>seq166171
Length=186617
Score = 96.9 bits (106), Expect = 1e-17
Identities = 118/160 (74%), Gaps = 12/160 (8%)
Strand=Plus/Plus
Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331
||| ||||||||||| ||| || ||||||||| |||| ||| ||||| |||||| |
Sbjct 180551 TGCAGCTCCAAAGAGAAAATTACCGAGGCAAGTATCGGAATATCCTGGAGAGTTTGGTGT 180610
Query 332 AAGGAGC-AGCCCCATTTCG----------GCTAAAGTGGAGATGGATCAAACAACAATG 380
| | || ||| |||||| ||||||||||||| || | |||| ||||
Sbjct 180611 ACGTGGCTTACCCTATTTCGTCTGTCTACAGCTAAAGTGGAGAGCAATGATACAATAATG 180670
Query 381 AAGATGGAG-GTTTCTTCTCCTAATTTGGAGAAGACCCCA 419
||||||||| |||||||||| || |||| |||||| |||
Sbjct 180671 AAGATGGAGATTTTCTTCTCCCAAGTTGGTGAAGACACCA 180710
>seq10678
Length=21233
Score = 80.6 bits (88), Expect = 1e-12
Identities = 145/207 (70%), Gaps = 20/207 (10%)
Strand=Plus/Plus
Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331
||| ||||| |||| || || | |||| || |||| ||| ||||| |||||| |
Sbjct 2818 TGCAGCTCCGTAGAGAAAGTTACCGACGCAAATATCGGAATATCCTGGAGAGTTTGGTGT 2877
Query 332 AAGGAGCAGCCCC-ATTTCG----------GCTAAAGTGGAGATGGATCAAACAACAATG 380
| | ||| ||| |||||| ||||||||||||| || | |||| ||||
Sbjct 2878 ACGTAGCTTACCCTATTTCGTCTGACTACAGCTAAAGTGGAGAGCAATGATACAATAATG 2937
Query 381 AAGATGGAG-GTTTCTTCTCCTAATTTGGAG-AAGACCCCACA-ATCTAC-AG-----CG 431
||||||||| |||||||||| || |||| | ||||||||| | ||||| || |
Sbjct 2938 AAGATGGAGAATTTCTTCTCCCAAGTTGGTGTAAGACCCCAAATGTCTACTAGTACTACT 2997
Query 432 GAAAATGGAGTTTCCTTATATGATTTG 458
||||||| | | |||||| ||||||
Sbjct 2998 TAAAATGGTGCCTTCTTATACGATTTG 3024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1961390979286
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