Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq4630 374 3e-101 seq51665 370 4e-100 seq31251 370 4e-100 seq166171 96.9 1e-17 seq10678 80.6 1e-12 >seq4630 Length=5021 Score = 374 bits (414), Expect = 3e-101 Identities = 317/392 (81%), Gaps = 36/392 (9%) Strand=Plus/Plus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||||||||| || |||||||| ||||||||| ||||||||||||| Sbjct 3792 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCTGGAGGATTTGGTGC 3851 Query 332 AAGGAGCAGCCCCATTTCGGCT---------------AAAGTGGAGATGGATCA---AAC 373 |||||||||||||||||| || ||||||||||||||||| ||| Sbjct 3852 AAGGAGCAGCCCCATTTCATCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAAC 3911 Query 374 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGA 433 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 3912 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGA 3971 Query 434 AAATGGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGA 493 |||||| || || ||||||||||| ||||||||||||||||||||||||| | | | || Sbjct 3972 AAATGGTGTATCTTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCGGA 4031 Query 494 TCCGGTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGA 553 ||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||| Sbjct 4032 TCCGGTACCGGAGACGATGAAGGTGGAATCTGAGGCCAAGAGGAGGCCTGAGGAATCTGA 4091 Query 554 ATTTACTATGGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGT 613 ||| |||||||||||| | ||| || || ||| |||||||| ||| Sbjct 4092 ATT---TATGGAGAGTAAGGAGGAGGT------------GAGGGAGTCTTCTACT-TTG- 4134 Query 614 TGCAGCGGAGAGTAGTATTCATGAGGTTGCTG 645 | ||| || | ||||| || ||||| ||||| Sbjct 4135 -GGAGCAGAAAATAGTAATCGTGAGGATGCTG 4165 Score = 228 bits (252), Expect = 3e-57 Identities = 205/254 (81%), Gaps = 20/254 (8%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||||||||| || |||||||||||||| |||||| ||||||| || Sbjct 3459 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTGCTTCATCCAAC 3518 Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148 ||||||||||| |||||||||||||||||||| | | || |||| |||| Sbjct 3519 AACCCTGAAGAGCTAGAGATTGAGATTGCTGAAGTGTTATACGGGTTGATGACCCAGTCA 3578 Query 149 TCATGGACCTTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGT 202 || ||||||||||| ||||| | ||| ||| |||||||| ||||||||||| Sbjct 3579 -CAAGGACCTTCCAAGAAAGAAAGTGGTGGAGGAGGACGAAATGATACAACAAGAGAAGT 3637 Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262 |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 3638 CAATA---ACAGATCCAGAGTTTCTTCTCCTGTTTCAAATTCTAACTCATCAGCTACTCC 3694 Query 263 TTTATCTGCTGCTG 276 ||||||||||| || Sbjct 3695 TTTATCTGCTGTTG 3708 >seq51665 Length=26289 Score = 370 bits (410), Expect = 4e-100 Identities = 316/392 (81%), Gaps = 36/392 (9%) Strand=Plus/Plus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||||||||| || |||||||| ||||||||| |||||||||||| Sbjct 11745 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCCGGAGGATTTGGTGC 11804 Query 332 AAGGAGCAGCCCCATTTCGGC---------------TAAAGTGGAGATGGATCA---AAC 373 ||||||||||||||||||| | |||||||||||||||||| ||| Sbjct 11805 AAGGAGCAGCCCCATTTCGTCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAAC 11864 Query 374 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGA 433 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 11865 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGA 11924 Query 434 AAATGGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGA 493 |||||| || || ||||||||||| ||||||||||||||||||||||||| | | |||| Sbjct 11925 AAATGGTGTATCTTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCAGA 11984 Query 494 TCCGGTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGA 553 ||||||||||||| | |||||||| ||||| |||| ||||||||||||||| |||||||| Sbjct 11985 TCCGGTACCGGAGACTATGAAGGTGGAATCCGAGGCCAAGAGGAGGCCTGAGGAATCTGA 12044 Query 554 ATTTACTATGGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGT 613 ||| |||||||||||| | ||| || || ||| |||||||| ||| Sbjct 12045 ATT---TATGGAGAGTAAGGAGGAGGT------------GAGGGAATCTTCTACT-TTG- 12087 Query 614 TGCAGCGGAGAGTAGTATTCATGAGGTTGCTG 645 | ||| || | ||||| || ||||| ||||| Sbjct 12088 -GGAGCAGAAAATAGTAATCGTGAGGATGCTG 12118 Score = 226 bits (250), Expect = 1e-56 Identities = 205/254 (81%), Gaps = 23/254 (9%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||||||||| || |||||||||||||| |||||||||||||| || Sbjct 11413 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAAC 11472 Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148 ||||||||||| |||||||| ||||||||||| | | || |||| |||| Sbjct 11473 AACCCTGAAGAGCTAGAGATTGAAATTGCTGAAGTGTTATACGGGTTGATGACTCAGTCA 11532 Query 149 TCATGGACCTTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGT 202 || ||||||||||| ||||| ||||| ||| |||||||| || |||||||| Sbjct 11533 -CAAGGACCTTCCAAGAAAGA---AAGTGGAGGAGGACCAAATGATACGACTAGAGAAGT 11588 Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262 |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 11589 CAATA---ACAGATCCAGAGTTTCATCTCCTGTTTCAAATTCTAACTCGTCAGCTACTCC 11645 Query 263 TTTATCTGCTGCTG 276 ||||||||||| || Sbjct 11646 TTTATCTGCTGTTG 11659 >seq31251 Length=226614 Score = 370 bits (410), Expect = 4e-100 Identities = 316/392 (81%), Gaps = 36/392 (9%) Strand=Plus/Minus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||||||||| || |||||||| ||||||||| |||||||||||| Sbjct 219690 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCCGGAGGATTTGGTGC 219631 Query 332 AAGGAGCAGCCCCATTTCGGC---------------TAAAGTGGAGATGGATCA---AAC 373 ||||||||||||||||||| | |||||||||||||||||| ||| Sbjct 219630 AAGGAGCAGCCCCATTTCGTCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAAC 219571 Query 374 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGA 433 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 219570 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGA 219511 Query 434 AAATGGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGA 493 |||||| || || ||||||||||| ||||||||||||||||||||||||| | | |||| Sbjct 219510 AAATGGTGTATCTTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCAGA 219451 Query 494 TCCGGTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGA 553 ||||||||||||| | |||||||| ||||| |||| ||||||||||||||| |||||||| Sbjct 219450 TCCGGTACCGGAGACTATGAAGGTGGAATCCGAGGCCAAGAGGAGGCCTGAGGAATCTGA 219391 Query 554 ATTTACTATGGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGT 613 ||| |||||||||||| | ||| || || ||| |||||||| ||| Sbjct 219390 ATT---TATGGAGAGTAAGGAGGAGGT------------GAGGGAATCTTCTACT-TTG- 219348 Query 614 TGCAGCGGAGAGTAGTATTCATGAGGTTGCTG 645 | ||| || | ||||| || ||||| ||||| Sbjct 219347 -GGAGCAGAAAATAGTAATCGTGAGGATGCTG 219317 Score = 226 bits (250), Expect = 1e-56 Identities = 205/254 (81%), Gaps = 23/254 (9%) Strand=Plus/Minus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||||||||| || |||||||||||||| |||||||||||||| || Sbjct 220022 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAAC 219963 Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148 ||||||||||| |||||||| ||||||||||| | | || |||| |||| Sbjct 219962 AACCCTGAAGAGCTAGAGATTGAAATTGCTGAAGTGTTATACGGGTTGATGACTCAGTCA 219903 Query 149 TCATGGACCTTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGT 202 || ||||||||||| ||||| ||||| ||| |||||||| || |||||||| Sbjct 219902 -CAAGGACCTTCCAAGAAAGA---AAGTGGAGGAGGACCAAATGATACGACTAGAGAAGT 219847 Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262 ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 219846 CAATAA---CAGATCCAGAGTTTCATCTCCTGTTTCAAATTCTAACTCGTCAGCTACTCC 219790 Query 263 TTTATCTGCTGCTG 276 ||||||||||| || Sbjct 219789 TTTATCTGCTGTTG 219776 >seq166171 Length=186617 Score = 96.9 bits (106), Expect = 1e-17 Identities = 118/160 (74%), Gaps = 12/160 (8%) Strand=Plus/Plus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||| ||| || ||||||||| |||| ||| ||||| |||||| | Sbjct 180551 TGCAGCTCCAAAGAGAAAATTACCGAGGCAAGTATCGGAATATCCTGGAGAGTTTGGTGT 180610 Query 332 AAGGAGC-AGCCCCATTTCG----------GCTAAAGTGGAGATGGATCAAACAACAATG 380 | | || ||| |||||| ||||||||||||| || | |||| |||| Sbjct 180611 ACGTGGCTTACCCTATTTCGTCTGTCTACAGCTAAAGTGGAGAGCAATGATACAATAATG 180670 Query 381 AAGATGGAG-GTTTCTTCTCCTAATTTGGAGAAGACCCCA 419 ||||||||| |||||||||| || |||| |||||| ||| Sbjct 180671 AAGATGGAGATTTTCTTCTCCCAAGTTGGTGAAGACACCA 180710 >seq10678 Length=21233 Score = 80.6 bits (88), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 20/207 (10%) Strand=Plus/Plus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||| |||| || || | |||| || |||| ||| ||||| |||||| | Sbjct 2818 TGCAGCTCCGTAGAGAAAGTTACCGACGCAAATATCGGAATATCCTGGAGAGTTTGGTGT 2877 Query 332 AAGGAGCAGCCCC-ATTTCG----------GCTAAAGTGGAGATGGATCAAACAACAATG 380 | | ||| ||| |||||| ||||||||||||| || | |||| |||| Sbjct 2878 ACGTAGCTTACCCTATTTCGTCTGACTACAGCTAAAGTGGAGAGCAATGATACAATAATG 2937 Query 381 AAGATGGAG-GTTTCTTCTCCTAATTTGGAG-AAGACCCCACA-ATCTAC-AG-----CG 431 ||||||||| |||||||||| || |||| | ||||||||| | ||||| || | Sbjct 2938 AAGATGGAGAATTTCTTCTCCCAAGTTGGTGTAAGACCCCAAATGTCTACTAGTACTACT 2997 Query 432 GAAAATGGAGTTTCCTTATATGATTTG 458 ||||||| | | |||||| |||||| Sbjct 2998 TAAAATGGTGCCTTCTTATACGATTTG 3024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1961390979286