Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29]
168,247 sequences; 3,643,471,356 total letters
Query= AAMG01001756.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq140756 351 2e-94
seq113240 340 3e-91
>seq140756
Length=101636
Score = 351 bits (388), Expect = 2e-94
Identities = 264/310 (85%), Gaps = 3/310 (1%)
Strand=Plus/Minus
Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60
|||||||||| ||||| ||||||||||||||||| |||||||||||||||| || |||
Sbjct 14375 CGAGTCAATGCCCTAGAGCATGTGTAGGGGTGGGCAAAAATGGAAATTTGACTTGCTGGT 14316
Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120
|| |||||||||||||||||||||||||| || ||||| || ||||||||| ||||||
Sbjct 14315 CTGAATCCGACCCGAATGTTAAAGTCGGAGCTTGTGGTGTTGACCTTGGTGATCGGACCT 14256
Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACA 180
|||| |||||||||| |||||||| ||||| ||||| || ||||| || | |||| ||
Sbjct 14255 TGGTAACCGGGTCGGCCTATCAAGGAGCCCCGCATGGATTTTTCTTTGTGGAAAACAGCA 14196
Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240
| || || |||||||||||||||||| || |||||||||||||| ||||| || ||||
Sbjct 14195 AGAAAGAAGGGCAAAATAGTAAATTGGTGAAAATTGATGTTCCTGAGGAATTCTCAGGAT 14136
Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGGATTATATTATTGTAA---GT 297
||||||||||||||||||||||||||||||||||||||| || || ||||| ||| ||
Sbjct 14135 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGTATAATGTTATTATAATTTGT 14076
Query 298 ATTTATGTAA 307
| |||||||
Sbjct 14075 AAGTATGTAA 14066
>seq113240
Length=35196
Score = 340 bits (376), Expect = 3e-91
Identities = 258/303 (85%), Gaps = 1/303 (0%)
Strand=Plus/Minus
Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60
|||||||||| ||||| ||||||||||||| ||| |||||||| ||||||| || ||||
Sbjct 4284 CGAGTCAATGCCCTAGAGCATGTGTAGGGGCGGGCAAAAATGGGAATTTGACTTGCTGGG 4225
Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120
|| |||||||||||||||||||||||||| || ||||| || ||||| ||| ||||||
Sbjct 4224 CTGAATCCGACCCGAATGTTAAAGTCGGAGCTTGTGGTGTTGACCTTGGAGATCGGACCT 4165
Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACA 180
|||| |||||||||| |||||||| ||||| ||||| |||||||| || | |||| ||
Sbjct 4164 TGGTAACCGGGTCGGCCTATCAAGGAGCCCCGCATGGATTCTTCTTTGTGGAAAACAGCA 4105
Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240
| || || |||||||||||||||||| || ||||||||||| || || ||||| ||||
Sbjct 4104 AGAAAGAAGGGCAAAATAGTAAATTGGTGAAAATTGATGTTCCAGAGGAGTTTTCAGGAT 4045
Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGGATTATATTA-TTGTAAGTAT 299
|||||||||||||||||||||||||||| |||||||||| || || ||| ||||||||||
Sbjct 4044 TTGTGCAATCTGGATGCTGTGTGGAGATTTGAAATTTTGTATAATGTTATTTGTAAGTAT 3985
Query 300 TTA 302
||
Sbjct 3984 GTA 3982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 916854819552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |