Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq140756 351 2e-94 seq113240 340 3e-91 >seq140756 Length=101636 Score = 351 bits (388), Expect = 2e-94 Identities = 264/310 (85%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60 |||||||||| ||||| ||||||||||||||||| |||||||||||||||| || ||| Sbjct 14375 CGAGTCAATGCCCTAGAGCATGTGTAGGGGTGGGCAAAAATGGAAATTTGACTTGCTGGT 14316 Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120 || |||||||||||||||||||||||||| || ||||| || ||||||||| |||||| Sbjct 14315 CTGAATCCGACCCGAATGTTAAAGTCGGAGCTTGTGGTGTTGACCTTGGTGATCGGACCT 14256 Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACA 180 |||| |||||||||| |||||||| ||||| ||||| || ||||| || | |||| || Sbjct 14255 TGGTAACCGGGTCGGCCTATCAAGGAGCCCCGCATGGATTTTTCTTTGTGGAAAACAGCA 14196 Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240 | || || |||||||||||||||||| || |||||||||||||| ||||| || |||| Sbjct 14195 AGAAAGAAGGGCAAAATAGTAAATTGGTGAAAATTGATGTTCCTGAGGAATTCTCAGGAT 14136 Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGGATTATATTATTGTAA---GT 297 ||||||||||||||||||||||||||||||||||||||| || || ||||| ||| || Sbjct 14135 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGTATAATGTTATTATAATTTGT 14076 Query 298 ATTTATGTAA 307 | ||||||| Sbjct 14075 AAGTATGTAA 14066 >seq113240 Length=35196 Score = 340 bits (376), Expect = 3e-91 Identities = 258/303 (85%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60 |||||||||| ||||| ||||||||||||| ||| |||||||| ||||||| || |||| Sbjct 4284 CGAGTCAATGCCCTAGAGCATGTGTAGGGGCGGGCAAAAATGGGAATTTGACTTGCTGGG 4225 Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120 || |||||||||||||||||||||||||| || ||||| || ||||| ||| |||||| Sbjct 4224 CTGAATCCGACCCGAATGTTAAAGTCGGAGCTTGTGGTGTTGACCTTGGAGATCGGACCT 4165 Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACA 180 |||| |||||||||| |||||||| ||||| ||||| |||||||| || | |||| || Sbjct 4164 TGGTAACCGGGTCGGCCTATCAAGGAGCCCCGCATGGATTCTTCTTTGTGGAAAACAGCA 4105 Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240 | || || |||||||||||||||||| || ||||||||||| || || ||||| |||| Sbjct 4104 AGAAAGAAGGGCAAAATAGTAAATTGGTGAAAATTGATGTTCCAGAGGAGTTTTCAGGAT 4045 Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTTGGATTATATTA-TTGTAAGTAT 299 |||||||||||||||||||||||||||| |||||||||| || || ||| |||||||||| Sbjct 4044 TTGTGCAATCTGGATGCTGTGTGGAGATTTGAAATTTTGTATAATGTTATTTGTAAGTAT 3985 Query 300 TTA 302 || Sbjct 3984 GTA 3982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916854819552