Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29]
168,247 sequences; 3,643,471,356 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq120678 84.2 2e-14
seq10624 84.2 2e-14
seq101388 78.8 9e-13
seq100806 78.8 9e-13
seq168247 75.2 1e-11
seq150008 75.2 1e-11
seq125794 75.2 1e-11
seq71757 75.2 1e-11
seq112115 73.4 4e-11
>seq120678
Length=45978
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| ||| |||| |||||||||| | || |||||| ||||
Sbjct 19814 GTTGAGCGATGGCCCTTCCACTCAACACCATCGGATCACTAAGGCCGACTTTCGTCCCTG 19755
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | | |||||||||| ||| | || |||||||
Sbjct 19754 CTCGATGGGTGGGTATTGCAGTCAAGCTCCCTTCTACCTTTGCACT 19709
>seq10624
Length=150917
Score = 84.2 bits (92), Expect = 2e-14
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| |||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 15554 GTTGAGCGAGAGCCCTTCCATACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 15495
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124
|||| | ||| |||| ||||||||| |||||| |||||
Sbjct 15494 TTCGACCAGTCGGTCTCACAGTCAAGCAGGCTTATACCATT 15454
>seq101388
Length=60420
Score = 78.8 bits (86), Expect = 9e-13
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 1482 TTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCAACTTTCGTCTCTGT 1541
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | |||| |||| |||||| || |||||| ||||| | || ||
Sbjct 1542 TCGACCAGTCAGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 1589
>seq100806
Length=104595
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||| |||||||||||| || | ||| |||||||||||| || ||||| |||
Sbjct 3188 GTTGAGCTATGGCCCTTCCACTCGGCACCGTCGGATCACTATGGCCAAATTTCGTCCCTA 3247
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || ||| |||||||||| ||| |||| |||||||
Sbjct 3248 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 3293
>seq168247
Length=430597
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 69814 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 69755
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 69754 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 69706
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 420564 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 420505
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 420504 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 420456
>seq150008
Length=345021
Score = 75.2 bits (82), Expect = 1e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||| |||||||| | | |||| |||||||||| | || |||||| ||||
Sbjct 108500 GTTGAGCGATGACCCTTCCACTTGGCACCATCGGATCACTAAGGCCGACTTTCGTCCCTG 108559
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|| || | ||| |||||||||| ||| |||| |||||||
Sbjct 108560 CTTGACGGATGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 108605
>seq125794
Length=40488
Score = 75.2 bits (82), Expect = 1e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||| |||||||| || | ||| || ||||||| | || |||||| ||||
Sbjct 38922 GTTGAGCGATGACCCTTCCACTCGGTACCGTCGAATCACTAAGGCCGACTTTCGTCCCTG 38981
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || ||| |||||||||| || |||| |||||||
Sbjct 38982 CTCGATGGGTGGGTCTTGCAGTCAAGCTCCTTTCTGCCTTTGCACT 39027
>seq71757
Length=1872
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||| ||||||||| | | || ||||||||||||| || ||||| |||
Sbjct 661 GTTGAGCGATAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCATCTCTG 720
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 721 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 769
>seq112115
Length=145818
Score = 73.4 bits (80), Expect = 4e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 51778 TTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGT 51837
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 51838 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 51885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472828082764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |