Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq120678 84.2 2e-14 seq10624 84.2 2e-14 seq101388 78.8 9e-13 seq100806 78.8 9e-13 seq168247 75.2 1e-11 seq150008 75.2 1e-11 seq125794 75.2 1e-11 seq71757 75.2 1e-11 seq112115 73.4 4e-11 >seq120678 Length=45978 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| ||| |||| |||||||||| | || |||||| |||| Sbjct 19814 GTTGAGCGATGGCCCTTCCACTCAACACCATCGGATCACTAAGGCCGACTTTCGTCCCTG 19755 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | | |||||||||| ||| | || ||||||| Sbjct 19754 CTCGATGGGTGGGTATTGCAGTCAAGCTCCCTTCTACCTTTGCACT 19709 >seq10624 Length=150917 Score = 84.2 bits (92), Expect = 2e-14 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 15554 GTTGAGCGAGAGCCCTTCCATACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 15495 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | ||| |||| ||||||||| |||||| ||||| Sbjct 15494 TTCGACCAGTCGGTCTCACAGTCAAGCAGGCTTATACCATT 15454 >seq101388 Length=60420 Score = 78.8 bits (86), Expect = 9e-13 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 1482 TTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCAACTTTCGTCTCTGT 1541 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | |||| |||| |||||| || |||||| ||||| | || || Sbjct 1542 TCGACCAGTCAGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 1589 >seq100806 Length=104595 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||| |||||||||||| || | ||| |||||||||||| || ||||| ||| Sbjct 3188 GTTGAGCTATGGCCCTTCCACTCGGCACCGTCGGATCACTATGGCCAAATTTCGTCCCTA 3247 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||| ||||||| Sbjct 3248 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 3293 >seq168247 Length=430597 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 69814 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 69755 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 69754 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 69706 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 420564 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 420505 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 420504 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 420456 >seq150008 Length=345021 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||| |||||||| | | |||| |||||||||| | || |||||| |||| Sbjct 108500 GTTGAGCGATGACCCTTCCACTTGGCACCATCGGATCACTAAGGCCGACTTTCGTCCCTG 108559 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 || || | ||| |||||||||| ||| |||| ||||||| Sbjct 108560 CTTGACGGATGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 108605 >seq125794 Length=40488 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||| |||||||| || | ||| || ||||||| | || |||||| |||| Sbjct 38922 GTTGAGCGATGACCCTTCCACTCGGTACCGTCGAATCACTAAGGCCGACTTTCGTCCCTG 38981 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| || |||| ||||||| Sbjct 38982 CTCGATGGGTGGGTCTTGCAGTCAAGCTCCTTTCTGCCTTTGCACT 39027 >seq71757 Length=1872 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||| ||||||||| | | || ||||||||||||| || ||||| ||| Sbjct 661 GTTGAGCGATAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCATCTCTG 720 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 721 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 769 >seq112115 Length=145818 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 51778 TTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGT 51837 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 51838 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 51885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472828082764