Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq119769 174 1e-38 seq156841 156 3e-33 >seq119769 Length=87979 Score = 174 bits (192), Expect = 1e-38 Identities = 377/561 (67%), Gaps = 5/561 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || ||| || |||||||| | ||||| |||||||| Sbjct 78326 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCTGAGGAAGTCGATTTA 78385 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || ||| | | ||||||| || | ||| ||| |||||||| | ||| Sbjct 78386 TCTTCAGATACCCGTCACTGGGAAACCCTAACCCCCGGCGAAAGGCATTTCATCACTCAT 78445 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || | || || || ||||| || ||||| ||||| || || || | | | ||| Sbjct 78446 GTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTC 78505 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | | || || ||||| ||||||||||| ||||||||||||||| || || || || Sbjct 78506 ATGAAAGAAGTCCAAGTTGCGGAGGCGCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 78565 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG-CGGGCGGA 61385 || |||| || |||||||||||| | || | || | ||||||| ||| | | || | Sbjct 78566 AACATCCATTCCGAGATGTACAGTCTGCTTCTAGAGTCTTACATCAAGGACTCTGACGAA 78625 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | |||| ||| || | ||||| || || || || ||| ||| | || Sbjct 78626 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTG 78684 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 ||| | ||||||| | || | | ||||||| || || ||| | |||||||| Sbjct 78685 GGCACTACGTTGGATCGACGGTTCC---GAAACATTTGCGGAGCGTTTGGTTGCATTTGC 78741 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || ||| | |||||| |||| || || || || ||||| || || || Sbjct 78742 TTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAGCG 78801 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | ||||| || | |||||| || |||||||| ||| | ||||| || |||| Sbjct 78802 GGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTTGATTTCAAGGGACGAAGGTTTGCA 78861 Query 61626 TTGTGATTTTGCTGTTTTGCT 61646 |||||||||||| |||||| Sbjct 78862 CTGTGATTTTGCTTGTTTGCT 78882 >seq156841 Length=49269 Score = 156 bits (172), Expect = 3e-33 Identities = 373/561 (66%), Gaps = 5/561 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || ||| || |||||||| | || || |||||||| Sbjct 13454 ATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCTGGACTGCTGAAGAAGTCGATTTA 13395 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || || | | ||||||| || | ||||||| |||||||| | || Sbjct 13394 TCTTCCGATACCCGTCACTGGGAAACCCTAACCCCCGGTGAAAGGCATTTCATCACTCAC 13335 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || | || || || ||||| || ||||| ||||| || || || | | | ||| Sbjct 13334 GTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTC 13275 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | | || || ||||| | ||||||||| ||||||||||||||| || || || || Sbjct 13274 ATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTTCTACGGCTTCCAAATCGCGATTGAA 13215 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGA 61385 || ||||||| |||||||||||| | || | || ||||||||| ||| | | || | Sbjct 13214 AACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAA 13155 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | |||| ||| || | ||||| || || || || ||| ||| | || Sbjct 13154 AAAAGCA-GATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTG 13096 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 |||| | ||||||| || | | ||||||| || || ||| | || ||||| Sbjct 13095 GGCCCTACGTTGGATCGATGGT---TCCGAAACATTTGCGGAGCGTTTGGTTGCCTTTGC 13039 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 || || ||| | |||||| |||| || || || || ||||| || || || Sbjct 13038 TTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAGCG 12979 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | ||||| || | || ||| || ||||| || ||| | ||||| || |||| Sbjct 12978 GGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGGGACGAAGGTTTGCA 12919 Query 61626 TTGTGATTTTGCTGTTTTGCT 61646 |||||||||||| |||||| Sbjct 12918 CTGTGATTTTGCTTGTTTGCT 12898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396752782716080