Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq82958 374 3e-101 seq108972 96.9 1e-17 >seq82958 Length=125527 Score = 374 bits (414), Expect = 3e-101 Identities = 317/392 (81%), Gaps = 36/392 (9%) Strand=Plus/Plus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||||||||| || |||||||| ||||||||| ||||||||||||| | Sbjct 90740 TGCAGCTCCAAAGAGGAAAAGACCGAGGCAAGTCTTGGAAAATCCTGGAGGATTTGGTGT 90799 Query 332 AAGGAGCAGCCCCATTTCGGCT---------------AAAGTGGAGATGGATCA---AAC 373 |||||||||||||||||| || ||||||||||||||||| ||| Sbjct 90800 AAGGAGCAGCCCCATTTCATCTTCTACAGCTACTAATAAAGTGGAGATGGATCAGACAAC 90859 Query 374 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGA 433 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 90860 AACAATGAAGATGGAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTGCTGCTGA 90919 Query 434 AAATGGAGTTTCCTTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGA 493 |||||| || || ||||||||||| ||||||||||||||||||||||||| | | |||| Sbjct 90920 AAATGGTGTATCTTTATATGATTTAAGTGCTTCTGTACAAAGTTTGCCGGTTGCATCAGA 90979 Query 494 TCCGGTACCGGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGA 553 ||||||||||||| | |||||||| ||||| |||| ||||||||||||||| |||||||| Sbjct 90980 TCCGGTACCGGAGACTATGAAGGTGGAATCCGAGGCCAAGAGGAGGCCTGAGGAATCTGA 91039 Query 554 ATTTACTATGGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGT 613 ||| |||||||||||| | ||| || || ||| |||||||| ||| Sbjct 91040 ATT---TATGGAGAGTAAGGAGGAGGT------------GAGGGAATCTTCTACT-TTG- 91082 Query 614 TGCAGCGGAGAGTAGTATTCATGAGGTTGCTG 645 | ||| || | ||||| || ||||| ||||| Sbjct 91083 -GGAGCAGAAAATAGTAATCGTGAGGATGCTG 91113 Score = 226 bits (250), Expect = 1e-56 Identities = 205/254 (81%), Gaps = 23/254 (9%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||||||||| || |||||||||||||| |||||||||||||| || Sbjct 90409 AAGCCTAATGGACAAAAAAGGCCGCCGGCAAAGTCACCACCAAAAGCTTCTTCATCCAAC 90468 Query 99 ---CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTGA-------GTCA 148 ||||||||||| |||||||| ||||||||||| | | || |||| |||| Sbjct 90469 AACCCTGAAGAGCTAGAGATTGAAATTGCTGAAGTGTTATACGGGTTGATGACTCAGTCA 90528 Query 149 TCATGGACCTTCCAAAAAAGATACAAGTGT-----GAC-AAATGATAATACAAGAGAAGT 202 || ||||||||||| ||||| ||||| ||| |||||||| || |||||||| Sbjct 90529 -CAAGGACCTTCCAAGAAAGA---AAGTGGAGGAGGACCAAATGATACGACTAGAGAAGT 90584 Query 203 TAATAATAACAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCC 262 |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 90585 CAATA---ACAGATCCAGAGTTTCATCTCCTGTTTCAAATTCTAACTCGTCAGCTACTCC 90641 Query 263 TTTATCTGCTGCTG 276 ||||||||||| || Sbjct 90642 TTTATCTGCTGTTG 90655 >seq108972 Length=190352 Score = 96.9 bits (106), Expect = 1e-17 Identities = 118/160 (74%), Gaps = 12/160 (8%) Strand=Plus/Plus Query 272 TGCTGCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTAT 331 ||| ||||||||||| ||| || ||||||||| |||| ||| ||||| |||||| | Sbjct 123625 TGCAGCTCCAAAGAGAAAATTACCGAGGCAAGTATCGGAATATCCTGGAGAGTTTGGTGT 123684 Query 332 AAGGAGC-AGCCCCATTTCG----------GCTAAAGTGGAGATGGATCAAACAACAATG 380 | | || ||| |||||| ||||||||||||| || | |||| |||| Sbjct 123685 ACGTGGCTTACCCTATTTCGTCTGTCTACAGCTAAAGTGGAGAGCAATGATACAATAATG 123744 Query 381 AAGATGGAG-GTTTCTTCTCCTAATTTGGAGAAGACCCCA 419 ||||||||| |||||||||| || |||| |||||| ||| Sbjct 123745 AAGATGGAGATTTTCTTCTCCCAAGTTGGTGAAGACACCA 123784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1961567238424