Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq7 439 3e-118 seq476 221 1e-52 seq544 154 2e-32 >seq7 Length=7073 Score = 439 bits (486), Expect = 3e-118 Identities = 599/830 (72%), Gaps = 6/830 (1%) Strand=Plus/Minus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| |||||||| || || | || ||||| ||| ||| | ||| Sbjct 827 GACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 768 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || ||||||||||||||| | ||| Sbjct 767 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGTGGTATACCCATGGATTGGCT 708 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAGCGGCAGTTAGCACTCCAGCTGACG 161722 ||||||||| | || || ||||| ||||||| | || |||||| ||||| ||| | Sbjct 707 AGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCAGTTTCTACTCCTGCTAATA 650 Query 161723 CTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782 | | | |||||| | | || || ||||||||||| || || || ||||| | | Sbjct 649 GTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCACAGGGAGATTTTACTCGTT 590 Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842 || ||| | || || || |||| |||||| || |||| || ||||||| || || | Sbjct 589 GGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCATGGCGCTTTCGGACTAATAG 530 Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCT 161901 | |||||||| ||||| || ||||||||||| ||| || | | || ||||| ||||| Sbjct 529 GTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCA 471 Query 161902 ATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGA 161961 || || ||||||| ||| |||||||||||||| || || || || ||||| || || Sbjct 470 ATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGT 411 Query 161962 CAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTT 162021 ||||| |||||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 410 CAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTC 351 Query 162022 TTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGT 162081 || | ||||| || || ||||||||| | || || || || |||||||| || || ||| Sbjct 350 TTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGT 291 Query 162082 ATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTAC 162141 | ||||| | ||||||||| | |||||||| |||| || || ||||| || | | Sbjct 290 GTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTT 231 Query 162142 CAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACT 162201 |||||||||| |||||||| ||| |||||| || | || |||| ||| || ||| Sbjct 230 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACT 171 Query 162202 TACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAAT 162261 || || ||||| || || ||||| || ||||| || || || || |||||||| ||| Sbjct 170 TATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAAT 111 Query 162262 AAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCT 162321 || |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 110 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 51 Query 162322 ATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATC 162371 | || | | || || ||||| || || || || || |||||||| || Sbjct 50 CTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 221 bits (244), Expect = 1e-52 Identities = 314/438 (72%), Gaps = 3/438 (1%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| | ||| ||||| || | ||||| || || | || ||||| || || | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || |||||||||| |||||||| Sbjct 382 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 324 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || |||||||| || |||| || || | || || ||||| Sbjct 323 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 264 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 ||| || || ||||| || |||| |||| || || ||| | ||||| || || || Sbjct 263 CATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 204 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| ||||| | || || ||| | || || |||||||||| |||| | || Sbjct 203 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | || ||||||||||||||||| || | | ||| Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCG 85 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| |||||||| || ||||| ||||||||| || ||||| || || |||||| |||| Sbjct 84 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGC 25 Query 160222 TGTATTCCTCGTCTACCC 160239 ||| ||| | ||||||| Sbjct 24 TGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 154 bits (170), Expect = 2e-32 Identities = 168/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 160568 CACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCT 160627 ||||||||||| || ||||||||||| || || |||||||||||||| | ||| || Sbjct 10 CACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGC 69 Query 160628 ACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGA 160687 || ||||| ||||| || ||||||||||| |||||||| ||| | | || | |||||| Sbjct 70 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAAGGA 129 Query 160688 CAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATG 160747 | || | || |||||||| || | | | |||| || || | |||||||| ||| Sbjct 130 CGTGTAATTAATACTTGGGCTGATAT-CATTACCGTGCGAACCTTGATATGGAAGTTATG 188 Query 160748 CACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCT 160789 || || ||||| ||||| | ||| ||||| ||||| |||||| Sbjct 189 CATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551360141047800