Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq7 408 5e-109 seq476 206 3e-48 seq544 167 3e-36 >seq7 Length=7073 Score = 408 bits (452), Expect = 5e-109 Identities = 609/859 (71%), Gaps = 4/859 (0%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || || || || ||||| || ||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || ||||| ||||| ||| | || ||| || | || || ||| ||||| | Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AATTTCTT 679 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || || || || || || |||||| || | | | |||||| | | ||||| ||||| Sbjct 678 AACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGG 619 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 ||||||| | || || ||||| | ||| ||| | || || || ||| ||||||| Sbjct 618 TCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGT 559 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345 || |||| || ||||||| ||||| || |||||||| ||||| || ||||| || || Sbjct 558 TGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCG 499 Query 190346 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 ||| || | | || ||||| ||||| || || ||||||| ||| || |||||||||| Sbjct 498 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTG 440 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || || || || || || || || ||||| || |||||||||| ||||| || | Sbjct 439 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 380 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 | || ||||| || || || ||| ||||||| || || || || ||||| |||||| ||| Sbjct 379 GCGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGA 320 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 |||| || || |||||||| ||||| ||| | |||| | || | || | || || | Sbjct 319 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTC 260 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||||| || ||||| |||||||| | |||||||||||| ||||| || || | Sbjct 259 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 200 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || || | || |||| |||||| || ||||| |||||||| || ||||| || |||| Sbjct 199 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 140 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 | ||||| ||||| ||||| || ||||| | ||||| |||||||||||| | |||| Sbjct 139 CCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 80 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824 | || || | ||| | |||| | | | || | | ||||| ||||| ||||| | Sbjct 79 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTAC 20 Query 190825 GTGCTTATGACTTTGTATC 190843 | || ||||||||||| || Sbjct 19 GCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 206 bits (228), Expect = 3e-48 Identities = 310/428 (72%), Gaps = 13/428 (3%) Strand=Plus/Minus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-C 188930 ||| | |||||||| || | || ||||| ||||| | ||||||||||| ||| | | | Sbjct 421 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCTAC-CTTATTGAC 363 Query 188931 TGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCA 188989 ||||| |||| || || ||||||| | ||||| || || ||||| |||||||| | Sbjct 362 CGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTA 304 Query 188990 TCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 189049 | || ||||| || |||| || || | |||||||||||||| || || ||||| || Sbjct 303 TTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTATTTCAGGTGCCATTA 244 Query 189050 TCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCG 189109 | ||| | || || || ||| | ||||| ||||| || |||||||| || || | | Sbjct 243 TTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTG 184 Query 189110 ATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCA 189169 |||| ||| | ||||| |||||||||| |||| | || | |||||| | | || Sbjct 183 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG-- 126 Query 189170 TCTACGC---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTT 189226 | || || |||||||||||||||||||| || | | |||||| |||||||| |||| Sbjct 125 TGTA-GCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGTCTAGGTATGCGACCTT 68 Query 189227 GGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTAT 189285 |||| ||| |||| || || || || |||||||| || | || || || || |||| Sbjct 67 GGAT-TGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAC 9 Query 189286 CCTTTTGG 189293 || |||| Sbjct 8 CCAATTGG 1 >seq544 Length=768 Score = 167 bits (184), Expect = 3e-36 Identities = 177/232 (76%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 189607 CGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTC 189666 ||||| | ||||||||||| || || ||||| || || ||||||||||| || || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 189667 GGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGAT 189726 || | ||||| ||||| |||||||| ||||| ||||| ||||| |||||| | ||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 189727 GGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCA--ACCGTGCTGGTCTTGGTA 189784 ||||||| ||||| | || || ||||| || | ||| ||||||| |||| || Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGA---TATCATTACCGTGCGAACCTTGATA 177 Query 189785 TGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 ||||||| |||||||| ||||| ||||| | ||| ||||| || || || || Sbjct 178 TGGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634061762274000