Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq50997 73.4 8e-11 >seq50997 Length=3988 Score = 73.4 bits (80), Expect = 8e-11 Identities = 168/248 (68%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| | |||||| ||| | |||||||| |||| | | | | || || ||||||||| Sbjct 3315 TGACCGTGTGCCTGTTGAAGAATGAGCCGACGACTCA-TAGGCAATGGCTTGGTTAAGGG 3373 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| |||| || |||||||| ||| | ||||| | || || | | Sbjct 3374 AACCCA--CCGG-AGCCATAGCAAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCCTAT 3429 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| |||||| |||| ||||| ||| | | |||| Sbjct 3430 GGACTCGAACCTGGGTGATCTATCCACGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 3489 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 3490 GGTCCGAACCGACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGGTGAAATGCC 3549 Query 312 AATCAAAC 319 | || ||| Sbjct 3550 ACTCGAAC 3557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 971613252096