Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq81760 307 2e-81 seq66561 141 1e-31 seq111466 131 3e-28 seq107562 116 6e-24 seq96172 89.7 8e-16 >seq81760 Length=5622 Score = 307 bits (340), Expect = 2e-81 Identities = 224/256 (88%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||| ||||||||||| | | |||| |||||||||||||||||||||||| | Sbjct 3038 GTATAAAGGGCAAGGACGTAGTCAGCACAAGCT-GATGACTCGCGCTTACTAGGAATT-C 3095 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| Sbjct 3096 CTCGTTGAAGACCAACAATTACAATAATCTATCCCCATCATGATGAAATTTCAAAGATTA 3155 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||| ||| ||||||||||||||||| ||||| ||||| Sbjct 3156 CCCGGCCCTATCGGCCAAGGCTATAAACTCGTTGAATACATCAATGTAG-----TTGCGG 3210 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||| Sbjct 3211 CCCAGAACATCTAAGGGAATCACAGACATGTTATTGCCTCAAACTTACGCAGCCTAAAAG 3270 Query 241 GCCAT-CTCCCTCGAA 255 | | | |||||| || Sbjct 3271 GTCGTAGTCCCTCTAA 3286 >seq66561 Length=1373 Score = 141 bits (156), Expect = 1e-31 Identities = 91/98 (93%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 CATCAGTATAGCGCGCATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 123 Query 219 TCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||| ||||||||||||| | |||||| || Sbjct 122 TCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAA 85 >seq111466 Length=2949 Score = 131 bits (144), Expect = 3e-28 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 105 GAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164 ||| ||||||| ||||||| | ||||| |||| || ||| |||||||||||||||||| Sbjct 1614 GAAGTTTCAAAAATTACCCAGGTCTGTCAGCCACGGCTATAAACTCGTTGAATACATCAG 1555 Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 ||||||| || || | ||||||| || ||| | ||||| | ||||||||||||| |||| Sbjct 1554 TGTAGCGTGCATGAGACCCAGAATATTTAAAGACATCATAAACCTGTTATTGCCACAAAT 1495 Query 225 TTCCGTGGCCTAAAA 239 ||| | || |||||| Sbjct 1494 TTCTGCGGTCTAAAA 1480 >seq107562 Length=8737 Score = 116 bits (128), Expect = 6e-24 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| Sbjct 3216 CAGTGTAGCGCGCGTGCGGCCCTAAACATCTAAGGGCATCAAAGACCTATTATTGCCTCA 3275 Query 222 AACTTCCGTGGCCTAAAAG 240 | |||||| |||||||||| Sbjct 3276 ATCTTCCGCGGCCTAAAAG 3294 >seq96172 Length=2600 Score = 89.7 bits (98), Expect = 8e-16 Identities = 84/103 (82%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| | |||||| | ||||||||| |||| ||| Sbjct 72 GTACAAAGGGCAGGGACGTAATCAACGC-AATATGATGAATTGCGCTTACTGGGAA-TTC 129 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC-CATCACG 102 |||||| | | ||||||||||||| | ||||| |||||| Sbjct 130 CTCGTTCATGGGCAACAATTGCAATCCCCAATCCCAAATCACG 172 Score = 84.2 bits (92), Expect = 3e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 || |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 333 CATTGTAGCACGCGTGCGGCCTAGAGTATCTAAGGGCATCACAGACCTGTTATTGCCTC 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751111280995