Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq81760 307 2e-81
seq66561 141 1e-31
seq111466 131 3e-28
seq107562 116 6e-24
seq96172 89.7 8e-16
>seq81760
Length=5622
Score = 307 bits (340), Expect = 2e-81
Identities = 224/256 (88%), Gaps = 8/256 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| |||||||| ||||||||||| | | |||| |||||||||||||||||||||||| |
Sbjct 3038 GTATAAAGGGCAAGGACGTAGTCAGCACAAGCT-GATGACTCGCGCTTACTAGGAATT-C 3095
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||
Sbjct 3096 CTCGTTGAAGACCAACAATTACAATAATCTATCCCCATCATGATGAAATTTCAAAGATTA 3155
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| ||| |||||||||| ||| ||||||||||||||||| ||||| |||||
Sbjct 3156 CCCGGCCCTATCGGCCAAGGCTATAAACTCGTTGAATACATCAATGTAG-----TTGCGG 3210
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||| ||||||||| |||||||||||||||||| || |||||||||
Sbjct 3211 CCCAGAACATCTAAGGGAATCACAGACATGTTATTGCCTCAAACTTACGCAGCCTAAAAG 3270
Query 241 GCCAT-CTCCCTCGAA 255
| | | |||||| ||
Sbjct 3271 GTCGTAGTCCCTCTAA 3286
>seq66561
Length=1373
Score = 141 bits (156), Expect = 1e-31
Identities = 91/98 (93%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CATCAGTATAGCGCGCATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 123
Query 219 TCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
||||||||||| ||||||||||||| | |||||| ||
Sbjct 122 TCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAA 85
>seq111466
Length=2949
Score = 131 bits (144), Expect = 3e-28
Identities = 110/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 105 GAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164
||| ||||||| ||||||| | ||||| |||| || ||| ||||||||||||||||||
Sbjct 1614 GAAGTTTCAAAAATTACCCAGGTCTGTCAGCCACGGCTATAAACTCGTTGAATACATCAG 1555
Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224
||||||| || || | ||||||| || ||| | ||||| | ||||||||||||| ||||
Sbjct 1554 TGTAGCGTGCATGAGACCCAGAATATTTAAAGACATCATAAACCTGTTATTGCCACAAAT 1495
Query 225 TTCCGTGGCCTAAAA 239
||| | || ||||||
Sbjct 1494 TTCTGCGGTCTAAAA 1480
>seq107562
Length=8737
Score = 116 bits (128), Expect = 6e-24
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221
|||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 3216 CAGTGTAGCGCGCGTGCGGCCCTAAACATCTAAGGGCATCAAAGACCTATTATTGCCTCA 3275
Query 222 AACTTCCGTGGCCTAAAAG 240
| |||||| ||||||||||
Sbjct 3276 ATCTTCCGCGGCCTAAAAG 3294
>seq96172
Length=2600
Score = 89.7 bits (98), Expect = 8e-16
Identities = 84/103 (82%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| | |||||| | ||||||||| |||| |||
Sbjct 72 GTACAAAGGGCAGGGACGTAATCAACGC-AATATGATGAATTGCGCTTACTGGGAA-TTC 129
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC-CATCACG 102
|||||| | | ||||||||||||| | ||||| ||||||
Sbjct 130 CTCGTTCATGGGCAACAATTGCAATCCCCAATCCCAAATCACG 172
Score = 84.2 bits (92), Expect = 3e-14
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 333 CATTGTAGCACGCGTGCGGCCTAGAGTATCTAAGGGCATCACAGACCTGTTATTGCCTC 391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751111280995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |