Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq96172 104 4e-20 seq40352 98.7 2e-18 seq111025 87.8 3e-15 seq16531 80.6 5e-13 >seq96172 Length=2600 Score = 104 bits (114), Expect = 4e-20 Identities = 106/136 (78%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 185 AATGATTAATAGGGATAGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||| |||| || ||||||| || | |||||| | || || ||||||||||||||| Sbjct 1086 AATGGTTAAAAGAAATAGTCGCGGCGGCATCAGTACTGCATCGTGAGAGGTGAAATTCTT 1027 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 || || |||||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 1026 AGACCGATGCAAGACTAACTGAAGCGAAAGCGTTTGCCGAGGATATTTTCATTAATCA-A 968 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 967 GAACGAAAGTTAGAGG 952 >seq40352 Length=11214 Score = 98.7 bits (108), Expect = 2e-18 Identities = 100/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||||||||| ||||| | ||| | ||||| || |||| | |||||||| || Sbjct 10643 GTAATGATTAGCAGGGACAACAATGGGCATTCGTATTTCATAGTCATATGTGAAATTTTT 10702 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 || ||||| ||||| || ||||||||||| || |||||| |||||||||||||||| | Sbjct 10703 GGGTTTATGAAAGACAAAGAACTGCGAAAGCATTTACCAAGAATGTTTTCATTAATCAAT 10762 Query 303 GAACGAAAG 311 |||||||| Sbjct 10763 -AACGAAAG 10770 >seq111025 Length=7251 Score = 87.8 bits (96), Expect = 3e-15 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 112 TGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 ||||| ||| ||||||||||| |||||| |||||| | || | ||||| |||||| | Sbjct 4663 TGCTCAAAT-CATTAGCATGGGATAATATTATAGGATTT-CGATCCTATTGTGTTGGCCT 4606 Query 172 CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAG 231 | ||| || ||||||||||| || || | || ||| | ||||| || ||||||| Sbjct 4605 TTGGGATCGGAGTAATGATTAACAGAGACAACCGTGGGCATTCGTATTTCATAGTCAGAG 4546 Query 232 GTGAAATTCTTGGAT 246 || ||||||||| || Sbjct 4545 GTAAAATTCTTGAAT 4531 >seq16531 Length=569 Score = 80.6 bits (88), Expect = 5e-13 Identities = 81/104 (78%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||||||||| | || || ||| ||| || |||| Sbjct 160 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTGTGAAAAACAAACAACTACGGAAGCA 101 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || | ||| || ||||||||||||| || | ||||| |||| Sbjct 100 TTTGCTAAGAATATTTTCATTAATCA-AGACCAAAAGTCGGGGG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914083520064