Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq96171 136 2e-29 seq94631 113 2e-22 >seq96171 Length=2850 Score = 136 bits (150), Expect = 2e-29 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||| ||||||||||||||||||||||| || | |||||||||||||||||||||| Sbjct 329 TTGGTACCCGAAAGATGGTGAACTATGCTTGGGCAAATTGAAGCCAGAGGAAACTCTGGT 270 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | | |||| ||||| |||||||||||||||||| | || |||||||||||| Sbjct 269 GGAGGATTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGAGTATAGGGGCGA 212 Score = 84.2 bits (92), Expect = 9e-14 Identities = 112/151 (74%), Gaps = 10/151 (7%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCT---- 95 ||||||||||| ||| || |||| || || || |||||||| | || ||| ||| Sbjct 1239 GAGTCGAGTTGCTTGAGAGTGCAACTTAAAGTGCGAGGTAAACTACTCGTAAGGCTAGTT 1180 Query 96 --AAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCA 151 ||||| ||| | || ||||||||| ||||||| |||| ||||| ||||| || | Sbjct 1179 TGAAATA-CGGCTACGACACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAATAGAA 1121 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 ||||| | |||||||| || || ||||||| Sbjct 1120 CTTTGCAGAGAGAGTT-AAGAGGGCGTGAAA 1091 >seq94631 Length=25318 Score = 113 bits (124), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 518 TCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAA 577 |||||||| |||| | | || || || ||| ||||||| |||| |||| || || Sbjct 277 TCGACCGACTTTGATCTTCTGAGAAGGGTTCAAGT--GAGCATACCTGTCGGGATCCAAA 334 Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||| |||||||||| |||| || |||| ||||||||||||||||||||| ||||| Sbjct 335 AGATAGTGAACTATGTCTGAGC-GGTCAAAGCTAGAGGAAACTCTGGTGGAGGCCCGCAG 393 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| || |||||| | | ||| | ||||||||||||| || Sbjct 394 TGATGCTGACGGGCAAATTGTTTGTCTGACTTGGGTATAGGGGTGA 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077383250150