Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq96171 136 2e-29
seq94631 113 2e-22
>seq96171
Length=2850
Score = 136 bits (150), Expect = 2e-29
Identities = 101/118 (86%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|||| ||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 329 TTGGTACCCGAAAGATGGTGAACTATGCTTGGGCAAATTGAAGCCAGAGGAAACTCTGGT 270
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| | | |||| ||||| |||||||||||||||||| | || ||||||||||||
Sbjct 269 GGAGGATTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGAGTATAGGGGCGA 212
Score = 84.2 bits (92), Expect = 9e-14
Identities = 112/151 (74%), Gaps = 10/151 (7%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCT---- 95
||||||||||| ||| || |||| || || || |||||||| | || ||| |||
Sbjct 1239 GAGTCGAGTTGCTTGAGAGTGCAACTTAAAGTGCGAGGTAAACTACTCGTAAGGCTAGTT 1180
Query 96 --AAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCA 151
||||| ||| | || ||||||||| ||||||| |||| ||||| ||||| || |
Sbjct 1179 TGAAATA-CGGCTACGACACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAATAGAA 1121
Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182
||||| | |||||||| || || |||||||
Sbjct 1120 CTTTGCAGAGAGAGTT-AAGAGGGCGTGAAA 1091
>seq94631
Length=25318
Score = 113 bits (124), Expect = 2e-22
Identities = 126/166 (76%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 518 TCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAA 577
|||||||| |||| | | || || || ||| ||||||| |||| |||| || ||
Sbjct 277 TCGACCGACTTTGATCTTCTGAGAAGGGTTCAAGT--GAGCATACCTGTCGGGATCCAAA 334
Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637
|||| |||||||||| |||| || |||| ||||||||||||||||||||| |||||
Sbjct 335 AGATAGTGAACTATGTCTGAGC-GGTCAAAGCTAGAGGAAACTCTGGTGGAGGCCCGCAG 393
Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| | ||| || |||||| | | ||| | ||||||||||||| ||
Sbjct 394 TGATGCTGACGGGCAAATTGTTTGTCTGACTTGGGTATAGGGGTGA 439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2077383250150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |